; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS018542 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018542
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold417:524689..525140
RNA-Seq ExpressionMS018542
SyntenyMS018542
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69746.1 VIRB2-interacting protein 2 [Prunus dulcis]9.9e-3958.5Show/hide
Query:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW
        ++RPISLVTSLY+++SKVL  RL++VL S I   Q+AF +GRQI+DA LIA+E+V E +  N SG + K+D EKAYD V+W F++E+L  K F  RWR W
Subjt:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW

Query:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS
        I+GCL + NFS++INGRP    R  R LRQGDPLS FLFTLV D +S
Subjt:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS

VVA13439.1 Hypothetical predicted protein, partial [Prunus dulcis]9.9e-3958.5Show/hide
Query:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW
        ++RPISLVTSLY+++SKVL  RL++VL S I   Q+AF +GRQI+DA LIA+E+V E +  N SG + K+D EKAYD V+W F++E+L  K F  RWR W
Subjt:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW

Query:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS
        I+GCL + NFS++INGRP    R  R LRQGDPLS FLFTLV D +S
Subjt:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS

VVA21938.1 Hypothetical predicted protein, partial [Prunus dulcis]9.9e-3958.5Show/hide
Query:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW
        ++RPISLVTSLY+++SKVL  RL++VL S I   Q+AF +GRQI+DA LIA+E+V E +  N SG + K+D EKAYD V+W F++E+L  K F  RWR W
Subjt:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW

Query:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS
        I+GCL + NFS++INGRP    R  R LRQGDPLS FLFTLV D +S
Subjt:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS

VVA25489.1 Hypothetical predicted protein, partial [Prunus dulcis]9.9e-3958.5Show/hide
Query:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW
        ++RPISLVTSLY+++SKVL  RL++VL S I   Q+AF +GRQI+DA LIA+E+V E +  N SG + K+D EKAYD V+W F++E+L  K F  RWR W
Subjt:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW

Query:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS
        I+GCL + NFS++INGRP    R  R LRQGDPLS FLFTLV D +S
Subjt:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS

VVA39726.1 Hypothetical predicted protein, partial [Prunus dulcis]9.9e-3958.5Show/hide
Query:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW
        ++RPISLVTSLY+++SKVL  RL++VL S I   Q+AF +GRQI+DA LIA+E+V E +  N SG + K+D EKAYD V+W F++E+L  K F  RWR W
Subjt:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW

Query:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS
        I+GCL + NFS++INGRP    R  R LRQGDPLS FLFTLV D +S
Subjt:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS

TrEMBL top hitse value%identityAlignment
A0A4Y1R3V4 VIRB2-interacting protein 24.8e-3958.5Show/hide
Query:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW
        ++RPISLVTSLY+++SKVL  RL++VL S I   Q+AF +GRQI+DA LIA+E+V E +  N SG + K+D EKAYD V+W F++E+L  K F  RWR W
Subjt:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW

Query:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS
        I+GCL + NFS++INGRP    R  R LRQGDPLS FLFTLV D +S
Subjt:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS

A0A5E4FED8 Reverse transcriptase domain-containing protein (Fragment)4.8e-3958.5Show/hide
Query:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW
        ++RPISLVTSLY+++SKVL  RL++VL S I   Q+AF +GRQI+DA LIA+E+V E +  N SG + K+D EKAYD V+W F++E+L  K F  RWR W
Subjt:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW

Query:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS
        I+GCL + NFS++INGRP    R  R LRQGDPLS FLFTLV D +S
Subjt:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS

A0A5E4GJ11 Reverse transcriptase domain-containing protein (Fragment)4.8e-3958.5Show/hide
Query:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW
        ++RPISLVTSLY+++SKVL  RL++VL S I   Q+AF +GRQI+DA LIA+E+V E +  N SG + K+D EKAYD V+W F++E+L  K F  RWR W
Subjt:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW

Query:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS
        I+GCL + NFS++INGRP    R  R LRQGDPLS FLFTLV D +S
Subjt:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS

A0A5H2XKI7 VIRB2-interacting protein 24.8e-3958.5Show/hide
Query:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW
        ++RPISLVTSLY+++SKVL  RL++VL S I   Q+AF +GRQI+DA LIA+E+V E +  N SG + K+D EKAYD V+W F++E+L  K F  RWR W
Subjt:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW

Query:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS
        I+GCL + NFS++INGRP    R  R LRQGDPLS FLFTLV D +S
Subjt:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS

M5XUF8 Reverse transcriptase domain-containing protein (Fragment)2.8e-3958.5Show/hide
Query:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW
        ++RPISLVTSLY+++SKVL  RL++VL S I   Q+AF +GRQI+DA LIA+E+V E +  N SG + K+D EKAYD V+W F++E+L  K F  RWR W
Subjt:  EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW

Query:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS
        I+GCL + NFS++INGRP   +R  R LRQGDPLS FLFTLV D +S
Subjt:  IKGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTLVGDSIS

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein6.1e-0729.66Show/hide
Query:  YRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQ----IMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRW
        +RPISL+    +I++K+L  R+++ +  +IH  Q  F  G Q    I  +I +   I    +A + +  I+ +D EKA+DK+   F+ + L     +  +
Subjt:  YRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQ----IMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRW

Query:  RMWIKGCLSSMNFSILINGRP-ERSLRKRELRQGDPLSLFLFTLV
           I+        +I++NG+  E    K   RQG PLS  LF +V
Subjt:  RMWIKGCLSSMNFSILINGRP-ERSLRKRELRQGDPLSLFLFTLV

P08548 LINE-1 reverse transcriptase homolog3.8e-0932.68Show/hide
Query:  YRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQ----IMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRW
        YRPISL+    +I++K+L  R+++ +  IIH  Q  F  G Q    I  +I +   I    K  N    IL +D EKA+D +   F+   L     E  +
Subjt:  YRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQ----IMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRW

Query:  RMWIKGCLSSMNFSILINGRPERSLRKRE-LRQGDPLSLFLFTLVGDSISILI
           I+   S    +I++NG   +S   R   RQG PLS  LF +V + ++I I
Subjt:  RMWIKGCLSSMNFSILINGRPERSLRKRE-LRQGDPLSLFLFTLVGDSISILI

P11369 LINE-1 retrotransposable element ORF2 protein1.5e-0830.99Show/hide
Query:  YRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEW-KATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW
        +RPISL+    +I++K+L  R+++ + +IIH  Q  F  G Q    I  +  ++    K  + +  I+ LD EKA+DK+   F+ ++L     +  +   
Subjt:  YRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEW-KATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMW

Query:  IKGCLSSMNFSILINGRPERSL-RKRELRQGDPLSLFLFTLV
        IK   S    +I +NG    ++  K   RQG PLS +LF +V
Subjt:  IKGCLSSMNFSILINGRPERSL-RKRELRQGDPLSLFLFTLV

P14381 Transposon TX1 uncharacterized 149 kDa protein1.4e-1134.29Show/hide
Query:  YRPISLVTSLYRIISKVLVERLKKVLPSIIH-DAQAAFKGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMWI
        +RP+SL+++ Y+I++K +  RLK VL  +IH D      GR I D + +  +++   + T +S   L LD EKA+D+VD  +L   L   SF  ++  ++
Subjt:  YRPISLVTSLYRIISKVLVERLKKVLPSIIH-DAQAAFKGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMWI

Query:  KGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTL
        K   +S    + IN      L   R +RQG PLS  L++L
Subjt:  KGCLSSMNFSILINGRPERSLR-KRELRQGDPLSLFLFTL

Q03274 Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment)3.0e-0626.85Show/hide
Query:  YRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAFKGRQIMDAILIASEIVGEW----KATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWR
        +RPI++ ++L R++ ++L +RL+  +   +H AQ   KG   +D  L+ S ++  +    +    +  ++ LD  KA+D V    +   L     +    
Subjt:  YRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAFKGRQIMDAILIASEIVGEW----KATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWR

Query:  MWIKGCLSSMNFSILI--NGRPERSLRKRELRQGDPLSLFLFTLVGDSI
         +I G LS    +I +    +  +   +R ++QGDPLS FLF  V D +
Subjt:  MWIKGCLSSMNFSILI--NGRPERSLRKRELRQGDPLSLFLFTLVGDSI

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases2.2e-0739.51Show/hide
Query:  LVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEW-KATNISGF-ILKLDYEKAYDKVDWLFLEEILAHKSFESRW
        +VERLK ++ ++I  AQA+F  GR   D I+   E V    +   + G+ +LKLD EKAYD++ W +LE+ L    F   W
Subjt:  LVERLKKVLPSIIHDAQAAF-KGRQIMDAILIASEIVGEW-KATNISGF-ILKLDYEKAYDKVDWLFLEEILAHKSFESRW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGTATAGGCCGATAAGCCTGGTTACCTCTTTGTACAGGATCATCTCAAAGGTGTTGGTAGAAAGACTCAAGAAAGTGCTTCCATCCATTATACATGATGCTCAAGCAGC
TTTCAAAGGGAGACAAATTATGGATGCTATTTTGATTGCCTCAGAAATAGTCGGAGAATGGAAGGCTACTAACATATCAGGTTTCATCCTAAAGCTCGACTATGAGAAGG
CGTATGACAAAGTAGATTGGTTGTTTCTTGAGGAGATTCTTGCCCATAAAAGCTTCGAAAGTAGGTGGAGAATGTGGATAAAAGGATGTCTGTCATCGATGAACTTTTCT
ATCCTTATCAATGGCCGACCCGAAAGATCTTTGCGAAAACGCGAGTTGAGACAAGGAGACCCCTTATCTCTCTTCTTGTTTACGCTGGTAGGAGATTCTATTAGTATTTT
GATT
mRNA sequenceShow/hide mRNA sequence
GAGTATAGGCCGATAAGCCTGGTTACCTCTTTGTACAGGATCATCTCAAAGGTGTTGGTAGAAAGACTCAAGAAAGTGCTTCCATCCATTATACATGATGCTCAAGCAGC
TTTCAAAGGGAGACAAATTATGGATGCTATTTTGATTGCCTCAGAAATAGTCGGAGAATGGAAGGCTACTAACATATCAGGTTTCATCCTAAAGCTCGACTATGAGAAGG
CGTATGACAAAGTAGATTGGTTGTTTCTTGAGGAGATTCTTGCCCATAAAAGCTTCGAAAGTAGGTGGAGAATGTGGATAAAAGGATGTCTGTCATCGATGAACTTTTCT
ATCCTTATCAATGGCCGACCCGAAAGATCTTTGCGAAAACGCGAGTTGAGACAAGGAGACCCCTTATCTCTCTTCTTGTTTACGCTGGTAGGAGATTCTATTAGTATTTT
GATT
Protein sequenceShow/hide protein sequence
EYRPISLVTSLYRIISKVLVERLKKVLPSIIHDAQAAFKGRQIMDAILIASEIVGEWKATNISGFILKLDYEKAYDKVDWLFLEEILAHKSFESRWRMWIKGCLSSMNFS
ILINGRPERSLRKRELRQGDPLSLFLFTLVGDSISILI