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MS018544 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018544
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I assembly protein Ycf3
Genome locationscaffold417:547806..547913
RNA-Seq ExpressionMS018544
SyntenyMS018544
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AKZ30920.1 photosystem I assembly protein Ycf3, partial [Goodenia filiformis]2.1e-0680.56Show/hide
Query:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM
        M AQSEGNYA ALHNYYEAM+LEID YD+SYILY++
Subjt:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM

QWQ52078.1 hypothetical chloroplast RF34 [Pternopetalum vulgare]2.1e-0680.56Show/hide
Query:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM
        M AQSEGNYA ALHNYYEAM+LEID YD+SYILY++
Subjt:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM

YP_009390722.1 hypothetical chloroplast RF34 [Mangifera indica]2.1e-0680.56Show/hide
Query:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM
        M AQSEGNYA ALHNYYEAM+LEID YD+SYILY++
Subjt:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM

YP_009656428.1 photosystem I assembly protein Ycf3 [Medicago suffruticosa]2.1e-0680.56Show/hide
Query:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM
        M AQSEGNYA ALHNYYEAM+LEID YD+SYILY++
Subjt:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM

YP_009994051.1 photosystem I assembly protein Ycf3 [Corydalis inopinata]2.1e-0680.56Show/hide
Query:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM
        M AQSEGNYA ALHNYYEAM+LEID YD+SYILY++
Subjt:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM

TrEMBL top hitse value%identityAlignment
A0A1V0IZM2 Photosystem I assembly protein Ycf31.0e-0680.56Show/hide
Query:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM
        M AQSEGNYA ALHNYYEAM+LEID YD+SYILY++
Subjt:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM

A0A1Z1GA92 Photosystem I assembly protein Ycf31.0e-0680.56Show/hide
Query:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM
        M AQSEGNYA ALHNYYEAM+LEID YD+SYILY++
Subjt:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM

A0A6B9TR65 Photosystem I assembly protein Ycf31.0e-0680.56Show/hide
Query:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM
        M AQSEGNYA ALHNYYEAM+LEID YD+SYILY++
Subjt:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM

A0A6B9TRR9 Photosystem I assembly protein Ycf31.0e-0680.56Show/hide
Query:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM
        M AQSEGNYA ALHNYYEAM+LEID YD+SYILY++
Subjt:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM

A0A6B9TSP5 Photosystem I assembly protein Ycf31.0e-0680.56Show/hide
Query:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM
        M AQSEGNYA ALHNYYEAM+LEID YD+SYILY++
Subjt:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM

SwissProt top hitse value%identityAlignment
A8SEA4 Photosystem I assembly protein Ycf32.3e-0877.78Show/hide
Query:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM
        M AQSEGNYA AL NYYEAM+LEID YD+SYILY++
Subjt:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM

P61843 Photosystem I assembly protein Ycf32.3e-0877.78Show/hide
Query:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM
        M AQSEGNYA AL NYYEAM+LEID YD+SYILY++
Subjt:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM

Q09MH7 Photosystem I assembly protein Ycf32.3e-0877.78Show/hide
Query:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM
        M AQSEGNYA AL NYYEAM+LEID YD+SYILY++
Subjt:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM

Q53CF3 Photosystem I assembly protein Ycf32.3e-0877.78Show/hide
Query:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM
        M AQSEGNYA AL NYYEAM+LEID YD+SYILY++
Subjt:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM

Q8S8X3 Photosystem I assembly protein Ycf32.3e-0877.78Show/hide
Query:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM
        M AQSEGNYA AL NYYEAM+LEID YD+SYILY++
Subjt:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM

Arabidopsis top hitse value%identityAlignment
ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.6e-0977.78Show/hide
Query:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM
        M AQSEGNYA AL NYYEAM+LEID YD+SYILY++
Subjt:  MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGCTCAATCCGAAGGAAATTATGCGGTAGCTCTACATAATTATTATGAAGCTATGCAACTAGAAATCGATCTCTATGATCAAAGTTATATACTCTATGATATG
mRNA sequenceShow/hide mRNA sequence
ATGCCAGCTCAATCCGAAGGAAATTATGCGGTAGCTCTACATAATTATTATGAAGCTATGCAACTAGAAATCGATCTCTATGATCAAAGTTATATACTCTATGATATG
Protein sequenceShow/hide protein sequence
MPAQSEGNYAVALHNYYEAMQLEIDLYDQSYILYDM