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MS018546 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018546
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold417:578578..578973
RNA-Seq ExpressionMS018546
SyntenyMS018546
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR007592 - GLABROUS1 enhancer-binding protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585873.1 putative transcription factor, partial [Cucurbita argyrosperma subsp. sororia]5.4e-0433.63Show/hide
Query:  VKNKL-SVEVSNSQLSDKVYRLRKRFLKDECKGKRR-MKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCI
        VK +L + +VS  QLS+K+ R +K +LK+EC+ K   +K S+ ++ E ++ +S  IWG   +  N   GG    A+         F   +E + +DI C+
Subjt:  VKNKL-SVEVSNSQLSDKVYRLRKRFLKDECKGKRR-MKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCI

Query:  PPNVLEDIRKDWE
         P+ LE  +K+WE
Subjt:  PPNVLEDIRKDWE

KAG6607617.1 hypothetical protein SDJN03_00959, partial [Cucurbita argyrosperma subsp. sororia]1.6e-0836.73Show/hide
Query:  RMKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCIPPNVLEDIRKDWEQMKMAQDEYELKNANLLLQIS
        R K++  +      E     W +   ++ ++     WK+EAV++   +MF    +++K+D+SCI PN+L+ +RKDWE M  A+ EY+LKNA LL++IS
Subjt:  RMKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCIPPNVLEDIRKDWEQMKMAQDEYELKNANLLLQIS

XP_022158998.1 probable transcription factor At4g01260 [Momordica charantia]4.0e-6396.97Show/hide
Query:  VKNKLSVEVSNSQLSDKVYRLRKRFLKDECKGKRRMKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCIPP
        VKNKLSV+VSNSQLSDKVYRLRKRFLKDECKGK RMK SKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCIPP
Subjt:  VKNKLSVEVSNSQLSDKVYRLRKRFLKDECKGKRRMKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCIPP

Query:  NVLEDIRKDWEQMKMAQDEYELKNANLLLQIS
        NVL DIRKDWEQMKMAQDEYELKNANLLLQIS
Subjt:  NVLEDIRKDWEQMKMAQDEYELKNANLLLQIS

XP_023521141.1 probable transcription factor At1g61730 [Cucurbita pepo subsp. pepo]4.2e-0432.74Show/hide
Query:  VKNKL-SVEVSNSQLSDKVYRLRKRFLKDECKGK-RRMKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCI
        VK +L + +VS +Q+S+K+ R +K +LK+EC+ K   +K S+ ++ E ++ +S  IWG   +  N   GG    A+         F   +E + +DI C+
Subjt:  VKNKL-SVEVSNSQLSDKVYRLRKRFLKDECKGK-RRMKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCI

Query:  PPNVLEDIRKDWE
         P+ LE  +K+WE
Subjt:  PPNVLEDIRKDWE

XP_038877618.1 STOREKEEPER protein-like [Benincasa hispida]1.8e-2347.55Show/hide
Query:  VKNKLSVEVSNSQLSDKVYRLRKRFLKDECKGKRRMKISKGNQLEKLYEMSNNIWGSN-SNTQNTQSGGN----------QWKAEAVNRLCEEMFERVIE
        VK KLS EVSNSQLS KVYRLRKRF+K++        + +    EK++E+S NIWG +  N ++T  GG           QWK E V R  E+ F+  +E
Subjt:  VKNKLSVEVSNSQLSDKVYRLRKRFLKDECKGKRRMKISKGNQLEKLYEMSNNIWGSN-SNTQNTQSGGN----------QWKAEAVNRLCEEMFERVIE

Query:  NVKVDISCIPPNVLEDIRKDWEQMKMAQDEYELKNANLLLQIS
        N+K+D++ IP +VLED+RK+WE ++ A+++YELKNA+LL +IS
Subjt:  NVKVDISCIPPNVLEDIRKDWEQMKMAQDEYELKNANLLLQIS

TrEMBL top hitse value%identityAlignment
A0A0A0L833 Uncharacterized protein1.3e-1642.22Show/hide
Query:  VKNKLSVEVSNSQLSDKVYRLRKRFL---KDECKGKRRMKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISC
        ++ KLSVEVSNSQLSDKVYRL+KRF+    ++     +M+    +  +KL+E+S+NIWG   N + ++    +          E++F+  +E +KVDI+ 
Subjt:  VKNKLSVEVSNSQLSDKVYRLRKRFL---KDECKGKRRMKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISC

Query:  IPPNVLEDIRKDWEQMKMAQDEYELKNANLLLQIS
        IPP+ L++IRK+WE +  A++ YELK A LL +IS
Subjt:  IPPNVLEDIRKDWEQMKMAQDEYELKNANLLLQIS

A0A6J1DXL5 probable transcription factor At4g012601.9e-6396.97Show/hide
Query:  VKNKLSVEVSNSQLSDKVYRLRKRFLKDECKGKRRMKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCIPP
        VKNKLSV+VSNSQLSDKVYRLRKRFLKDECKGK RMK SKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCIPP
Subjt:  VKNKLSVEVSNSQLSDKVYRLRKRFLKDECKGKRRMKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCIPP

Query:  NVLEDIRKDWEQMKMAQDEYELKNANLLLQIS
        NVL DIRKDWEQMKMAQDEYELKNANLLLQIS
Subjt:  NVLEDIRKDWEQMKMAQDEYELKNANLLLQIS

A0A6J1E125 probable transcription factor At4g006103.4e-0431.58Show/hide
Query:  VKNKLSVEVSNSQLSDKVYRLRKRFLK-DECKGKRRMKISKGNQLEKLYEMSNNIWGS--NSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISC
        VK KL  +VS  Q+ +K+  LR+++L+ DEC G +           K+   S  IWG+  N N    ++GG     E      E  F   +E +++++ C
Subjt:  VKNKLSVEVSNSQLSDKVYRLRKRFLK-DECKGKRRMKISKGNQLEKLYEMSNNIWGS--NSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISC

Query:  IPPNVLEDIRKDWE
        + P+ LE + KDWE
Subjt:  IPPNVLEDIRKDWE

A0A6J1GK86 probable transcription factor At1g664202.6e-0433.63Show/hide
Query:  VKNKL-SVEVSNSQLSDKVYRLRKRFLKDECKGKRR-MKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCI
        VK +L + +VS  QLS+K+ R +K +LK+EC+ K   +K S+ ++ E ++ +S  IWG   +  N   GG    A+         F   +E + +DI C+
Subjt:  VKNKL-SVEVSNSQLSDKVYRLRKRFLKDECKGKRR-MKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCI

Query:  PPNVLEDIRKDWE
         P+ LE  +K+WE
Subjt:  PPNVLEDIRKDWE

A0A6J1I882 probable transcription factor At1g617303.4e-0433.63Show/hide
Query:  VKNKLS-VEVSNSQLSDKVYRLRKRFLKDECKGKRR-MKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCI
        VK +LS  +VS  Q S+K+ R +K +LK+EC+ K   +K S+ ++ E ++ +S  IWG+  +  N   GG    A+         F   +E + +DI C+
Subjt:  VKNKLS-VEVSNSQLSDKVYRLRKRFLKDECKGKRR-MKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCI

Query:  PPNVLEDIRKDWE
         P+ LE  +K+WE
Subjt:  PPNVLEDIRKDWE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGAAGAACAAGTTGAGTGTGGAGGTCTCTAATTCTCAACTCTCAGATAAAGTGTATCGGTTGAGGAAGAGATTCTTGAAAGATGAATGCAAGGGAAAAAGAAGGATGAA
AATTTCAAAGGGCAACCAGCTGGAGAAGTTGTACGAGATGTCAAACAACATTTGGGGTTCCAATTCCAATACCCAAAATACCCAAAGTGGAGGGAATCAGTGGAAGGCTG
AAGCAGTGAATCGGTTGTGTGAAGAAATGTTTGAACGCGTTATAGAGAATGTGAAGGTGGACATCAGTTGCATACCACCTAACGTTTTGGAAGACATCAGGAAAGATTGG
GAGCAAATGAAGATGGCACAAGATGAATATGAATTGAAGAATGCCAACTTACTCCTTCAAATCTCC
mRNA sequenceShow/hide mRNA sequence
GTGAAGAACAAGTTGAGTGTGGAGGTCTCTAATTCTCAACTCTCAGATAAAGTGTATCGGTTGAGGAAGAGATTCTTGAAAGATGAATGCAAGGGAAAAAGAAGGATGAA
AATTTCAAAGGGCAACCAGCTGGAGAAGTTGTACGAGATGTCAAACAACATTTGGGGTTCCAATTCCAATACCCAAAATACCCAAAGTGGAGGGAATCAGTGGAAGGCTG
AAGCAGTGAATCGGTTGTGTGAAGAAATGTTTGAACGCGTTATAGAGAATGTGAAGGTGGACATCAGTTGCATACCACCTAACGTTTTGGAAGACATCAGGAAAGATTGG
GAGCAAATGAAGATGGCACAAGATGAATATGAATTGAAGAATGCCAACTTACTCCTTCAAATCTCC
Protein sequenceShow/hide protein sequence
VKNKLSVEVSNSQLSDKVYRLRKRFLKDECKGKRRMKISKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCIPPNVLEDIRKDW
EQMKMAQDEYELKNANLLLQIS