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MS018547 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018547
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold417:581921..582388
RNA-Seq ExpressionMS018547
SyntenyMS018547
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR007592 - GLABROUS1 enhancer-binding protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585873.1 putative transcription factor, partial [Cucurbita argyrosperma subsp. sororia]4.0e-1434.38Show/hide
Query:  KWSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQY--SELRRREP--KDLDSHSLKILKLSEKIWGVGDEGWPKTKVL
        +W + DEIIVL +L+Q+ G NA Y++ FY FVK  + + ++S +QLS  I   +K+Y  +E R++E   K  + H  ++  LS +IWG    G       
Subjt:  KWSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQY--SELRRREP--KDLDSHSLKILKLSEKIWGVGDEGWPKTKVL

Query:  RDQYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL
            Y K   EY ++E+   +DCLT S ++  KK+WE  +    E    + +F  +L EL
Subjt:  RDQYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL

KAG6607616.1 hypothetical protein SDJN03_00958, partial [Cucurbita argyrosperma subsp. sororia]9.5e-3250.63Show/hide
Query:  WSKRDEIIVLHKLFQYAGQNA---IYTREFYNFVKNNMLSVELSENQLSYLIYALRKQYSELRRREPKDLDSHSLKILKLSEKIWGVGDEGWPKTKVLRD
        WSKRDE+IVL KL ++ GQ+     YT +FYN V +  LSV++ +NQL Y+IY LRKQY E      K+ D   LK+++LS K+W V      KTKV+ D
Subjt:  WSKRDEIIVLHKLFQYAGQNA---IYTREFYNFVKNNMLSVELSENQLSYLIYALRKQYSELRRREPKDLDSHSLKILKLSEKIWGVGDEGWPKTKVLRD

Query:  QYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL
         YY + L+ YVVQ LG   DCLTS VV++IK+DW++F   ++E+R +Q RF+LQLCEL
Subjt:  QYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL

XP_022951915.1 probable transcription factor At1g66420 [Cucurbita moschata]4.0e-1434.38Show/hide
Query:  KWSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQY--SELRRREP--KDLDSHSLKILKLSEKIWGVGDEGWPKTKVL
        +W + DEIIVL +L+Q+ G NA Y++ FY FVK  + + ++S +QLS  I   +K+Y  +E R++E   K  + H  ++  LS +IWG    G       
Subjt:  KWSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQY--SELRRREP--KDLDSHSLKILKLSEKIWGVGDEGWPKTKVL

Query:  RDQYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL
            Y K   EY ++E+   +DCLT S ++  KK+WE  +    E    + +F  +L EL
Subjt:  RDQYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL

XP_022973281.1 probable transcription factor At1g61730 [Cucurbita maxima]2.0e-1332.93Show/hide
Query:  KWSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQY--SELRRREP--KDLDSHSLKILKLSEKIWGV----GDEGWPK
        +W + DEIIVL +L+++ G NA Y++ FY FVK  + + ++S +Q S  I   +K+Y  +E R++E   K  + H  ++  LS++IWG      + G  K
Subjt:  KWSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQY--SELRRREP--KDLDSHSLKILKLSEKIWGV----GDEGWPK

Query:  TKVLRDQYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL
                Y K   EY ++E+   +DCLT S ++  KK+WE  +    E    + +F+ +L EL
Subjt:  TKVLRDQYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL

XP_023521141.1 probable transcription factor At1g61730 [Cucurbita pepo subsp. pepo]3.1e-1433.75Show/hide
Query:  KWSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQY--SELRRR--EPKDLDSHSLKILKLSEKIWGVGDEGWPKTKVL
        +W + DEIIVL +L+Q+ G NA Y++ FY FVK  + + ++S NQ+S  I   +K+Y  +E R++  + K  + H  ++  LS +IWG    G       
Subjt:  KWSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQY--SELRRR--EPKDLDSHSLKILKLSEKIWGVGDEGWPKTKVL

Query:  RDQYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL
            Y K   EY ++E+   +DCLT S ++  KK+WE  +    E    + +F  +L EL
Subjt:  RDQYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL

TrEMBL top hitse value%identityAlignment
A0A0A0L833 Uncharacterized protein9.0e-0431.36Show/hide
Query:  LSVELSENQLSYLIYALRKQYSELRRREPKD-------LDSHSLKILKLSEKIWGVGDEGWPKTK---VLRDQYYKKSLQEYVVQELGFQVDCLTSSVVQ
        LSVE+S +QLS  +Y L+K++  ++  +  D        DS+  K+ +LS  IW  GDE  PK       R  Y  + + +  +++L   +  +    +Q
Subjt:  LSVELSENQLSYLIYALRKQYSELRRREPKD-------LDSHSLKILKLSEKIWGVGDEGWPKTK---VLRDQYYKKSLQEYVVQELGFQVDCLTSSVVQ

Query:  EIKKDWEDFMFAQNEYRM
         I+K+WED M A+N Y +
Subjt:  EIKKDWEDFMFAQNEYRM

A0A6J1DXL5 probable transcription factor At4g012601.6e-1330.59Show/hide
Query:  WSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQY------SELRRREPKDLDSHSLKILKLSEKIWG---------VG
        WS  DE ++L   +++AG+N  Y+++FY+FVKN  LSV++S +QLS  +Y LRK++       ++R +  K   +   K+ ++S  IWG          G
Subjt:  WSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQY------SELRRREPKDLDSHSLKILKLSEKIWG---------VG

Query:  DEGWPKTKVLRDQYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL
           W    V R     + + E V++ +   + C+  +V+ +I+KDWE    AQ+EY +      LQ+  +
Subjt:  DEGWPKTKVLRDQYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL

A0A6J1E125 probable transcription factor At4g006108.4e-1033.1Show/hide
Query:  KWSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQYSELRRREPKDL-------DSHSLKILKLSEKIWGVGD-EGWPK
        KW + DE+ VL +L++++G+NA Y+ EFY FVK   L  ++S +Q+   I  LR++Y  L   E   L         H  K+L  S++IWG  + E   K
Subjt:  KWSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQYSELRRREPKDL-------DSHSLKILKLSEKIWGVGD-EGWPK

Query:  TK----VLRDQYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWE
         K        + Y++   E  ++E+  ++DCL  S ++ + KDWE
Subjt:  TK----VLRDQYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWE

A0A6J1GK86 probable transcription factor At1g664201.9e-1434.38Show/hide
Query:  KWSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQY--SELRRREP--KDLDSHSLKILKLSEKIWGVGDEGWPKTKVL
        +W + DEIIVL +L+Q+ G NA Y++ FY FVK  + + ++S +QLS  I   +K+Y  +E R++E   K  + H  ++  LS +IWG    G       
Subjt:  KWSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQY--SELRRREP--KDLDSHSLKILKLSEKIWGVGDEGWPKTKVL

Query:  RDQYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL
            Y K   EY ++E+   +DCLT S ++  KK+WE  +    E    + +F  +L EL
Subjt:  RDQYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL

A0A6J1I882 probable transcription factor At1g617309.6e-1432.93Show/hide
Query:  KWSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQY--SELRRREP--KDLDSHSLKILKLSEKIWGV----GDEGWPK
        +W + DEIIVL +L+++ G NA Y++ FY FVK  + + ++S +Q S  I   +K+Y  +E R++E   K  + H  ++  LS++IWG      + G  K
Subjt:  KWSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQY--SELRRREP--KDLDSHSLKILKLSEKIWGV----GDEGWPK

Query:  TKVLRDQYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL
                Y K   EY ++E+   +DCLT S ++  KK+WE  +    E    + +F+ +L EL
Subjt:  TKVLRDQYYKKSLQEYVVQELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGTGGAGCAAACGGGATGAAATAATAGTCCTCCACAAACTGTTTCAATATGCAGGCCAAAACGCAATTTACACAAGAGAGTTCTACAACTTTGTCAAGAATAATATGCT
AAGTGTTGAGCTCTCTGAGAATCAGCTGTCCTACCTCATATATGCTTTAAGAAAGCAATATTCAGAGCTGCGCCGCCGGGAACCGAAAGATCTGGATTCCCATTCCCTCA
AGATTTTGAAGTTGTCAGAGAAAATATGGGGAGTTGGCGACGAGGGGTGGCCGAAGACAAAAGTGCTGAGGGATCAGTACTATAAGAAATCCCTTCAAGAGTATGTGGTT
CAAGAGTTAGGGTTTCAGGTGGATTGCTTGACATCTTCAGTTGTGCAAGAAATTAAGAAAGATTGGGAAGATTTTATGTTTGCTCAAAATGAGTATCGAATGATGCAACA
GAGATTCCATTTACAGCTCTGTGAATTG
mRNA sequenceShow/hide mRNA sequence
AAGTGGAGCAAACGGGATGAAATAATAGTCCTCCACAAACTGTTTCAATATGCAGGCCAAAACGCAATTTACACAAGAGAGTTCTACAACTTTGTCAAGAATAATATGCT
AAGTGTTGAGCTCTCTGAGAATCAGCTGTCCTACCTCATATATGCTTTAAGAAAGCAATATTCAGAGCTGCGCCGCCGGGAACCGAAAGATCTGGATTCCCATTCCCTCA
AGATTTTGAAGTTGTCAGAGAAAATATGGGGAGTTGGCGACGAGGGGTGGCCGAAGACAAAAGTGCTGAGGGATCAGTACTATAAGAAATCCCTTCAAGAGTATGTGGTT
CAAGAGTTAGGGTTTCAGGTGGATTGCTTGACATCTTCAGTTGTGCAAGAAATTAAGAAAGATTGGGAAGATTTTATGTTTGCTCAAAATGAGTATCGAATGATGCAACA
GAGATTCCATTTACAGCTCTGTGAATTG
Protein sequenceShow/hide protein sequence
KWSKRDEIIVLHKLFQYAGQNAIYTREFYNFVKNNMLSVELSENQLSYLIYALRKQYSELRRREPKDLDSHSLKILKLSEKIWGVGDEGWPKTKVLRDQYYKKSLQEYVV
QELGFQVDCLTSSVVQEIKKDWEDFMFAQNEYRMMQQRFHLQLCEL