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MS018582 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018582
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontransmembrane protein 50A
Genome locationscaffold313:70501..72706
RNA-Seq ExpressionMS018582
SyntenyMS018582
Gene Ontology termsGO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007919 - Uncharacterised protein family UPF0220


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140320.1 transmembrane protein 50A [Cucumis sativus]5.9e-6195.97Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLV
        S+VK GPSVWTGVAGVLQCVFVLV
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLV

XP_008460472.1 PREDICTED: transmembrane protein 50A [Cucumis melo]1.5e-6196.77Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLV
        S+VKTGPSVWTGVAGVLQCVFVLV
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLV

XP_022141734.1 transmembrane protein 50A [Momordica charantia]1.4e-6298.39Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLV
        SIVKTGPSVWTGVAGVLQCVFVLV
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLV

XP_022993057.1 transmembrane protein 50A [Cucurbita maxima]3.4e-6195.97Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFASFAALMFNCVR+EDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLV
        S+VKTGPSVWTGVAGVLQCVFVLV
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLV

XP_038874577.1 transmembrane protein 50A [Benincasa hispida]2.0e-6195.97Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSF+HYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLV
        S+VKTGPSVWTGVAGVLQCVFVLV
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLV

TrEMBL top hitse value%identityAlignment
A0A1S3CCJ8 transmembrane protein 50A7.5e-6296.77Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLV
        S+VKTGPSVWTGVAGVLQCVFVLV
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLV

A0A6J1CJN8 transmembrane protein 50A6.8e-6398.39Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLV
        SIVKTGPSVWTGVAGVLQCVFVLV
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLV

A0A6J1FCW9 transmembrane protein 50A-like8.3e-6195.16Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFAS AALMFNCVR+EDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLV
        S+VKTGPSVWTGVAGVLQCVFVLV
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLV

A0A6J1JRP9 transmembrane protein 50A1.7e-6195.97Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFASFAALMFNCVR+EDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLV
        S+VKTGPSVWTGVAGVLQCVFVLV
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLV

D6BRE9 Transmembrane protein 50a, putative1.8e-6093.55Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELW+IFGPGVAGAVFG GWWFW+DAVVCSSV VSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLV
        SIVKTGPSVWTG AGVLQCVFVL+
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLV

SwissProt top hitse value%identityAlignment
A9CAZ8 Transmembrane protein 50B3.9e-0730.89Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEEG----EWRRLWLFFAYVVSFVSLAASVG
        +D +E  +     VAG +F  GWW  +DA V    P    H  +  G+F++ A  M N V    +    YE G       R+WLF  +++ F SL AS+ 
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEEG----EWRRLWLFFAYVVSFVSLAASVG

Query:  LLIQDSIVKTGPSVWTGVAGVLQ
        +L   + V     V+ G+A   Q
Subjt:  LLIQDSIVKTGPSVWTGVAGVLQ

O95807 Transmembrane protein 50A3.5e-0832.74Show/hide
Query:  AGAVFGAGWWFWVDAVVCSSVPVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEEG----EWRRLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSV
        AG +F  GWW  +DA V       F H  +  G+ A+ A LM N V    +    Y EG       R+WLF  ++++F SL AS+ +L    + K    V
Subjt:  AGAVFGAGWWFWVDAVVCSSVPVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEEG----EWRRLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSV

Query:  WTGVAGVLQCVFV
        + G+A   Q  F+
Subjt:  WTGVAGVLQCVFV

P56557 Transmembrane protein 50B3.9e-0730.89Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEEG----EWRRLWLFFAYVVSFVSLAASVG
        +D +E  +     VAG +F  GWW  +DA V    P    H  +  G+F++ A  M N V    +    YE G       R+WLF  +++ F SL AS+ 
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEEG----EWRRLWLFFAYVVSFVSLAASVG

Query:  LLIQDSIVKTGPSVWTGVAGVLQ
        +L   + V     V+ G+A   Q
Subjt:  LLIQDSIVKTGPSVWTGVAGVLQ

Q3SZL9 Transmembrane protein 50B3.9e-0730.89Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEEG----EWRRLWLFFAYVVSFVSLAASVG
        +D +E  +     VAG +F  GWW  +DA V    P    H  +  G+F++ A  M N V    +    YE G       R+WLF  +++ F SL AS+ 
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEEG----EWRRLWLFFAYVVSFVSLAASVG

Query:  LLIQDSIVKTGPSVWTGVAGVLQ
        +L   + V     V+ G+A   Q
Subjt:  LLIQDSIVKTGPSVWTGVAGVLQ

Q9CXL1 Transmembrane protein 50A2.1e-0831.5Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEEG----EWRRLWLFFAYVVSFVSLAASVG
        MD  E  +      AG +F  GWW  +DA V       F H  +  G+ A+ A LM N V    +    Y EG       R+WLF  ++++F SL AS+ 
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEEG----EWRRLWLFFAYVVSFVSLAASVG

Query:  LLIQDSIVKTGPSVWTGVAGVLQCVFV
        +L    + K    V+ G+A   Q  F+
Subjt:  LLIQDSIVKTGPSVWTGVAGVLQCVFV

Arabidopsis top hitse value%identityAlignment
AT1G36980.1 unknown protein1.5e-5985.48Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELW+IFGPG +GAVFG GWWFWVDAVVCSS+ V FVHYLPGIFAS  ALMFNCVRKEDIDYSPY+EGEWR +LWLF AYVV+FVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQD

Query:  SIVKTGPSVWTGVAGVLQCVFVLV
        S+VKTGPS WTGVAGV QCVFVL+
Subjt:  SIVKTGPSVWTGVAGVLQCVFVLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGGCGGAACTGTGGTCAATCTTCGGCCCAGGCGTCGCCGGTGCCGTGTTCGGCGCCGGATGGTGGTTCTGGGTTGACGCCGTCGTCTGCAGTTCTGTTCCGGT
CTCCTTCGTCCACTACCTCCCAGGTATTTTTGCCTCTTTCGCGGCTCTCATGTTCAATTGCGTTCGGAAAGAAGATATCGATTATTCTCCGTACGAGGAAGGCGAATGGA
GGCGACTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTGATACAAGATTCAATAGTAAAAACTGGGCCATCAGTGTGGACG
GGAGTTGCGGGAGTATTACAGTGTGTGTTTGTGTTGGTT
mRNA sequenceShow/hide mRNA sequence
ATGGATTTGGCGGAACTGTGGTCAATCTTCGGCCCAGGCGTCGCCGGTGCCGTGTTCGGCGCCGGATGGTGGTTCTGGGTTGACGCCGTCGTCTGCAGTTCTGTTCCGGT
CTCCTTCGTCCACTACCTCCCAGGTATTTTTGCCTCTTTCGCGGCTCTCATGTTCAATTGCGTTCGGAAAGAAGATATCGATTATTCTCCGTACGAGGAAGGCGAATGGA
GGCGACTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTGATACAAGATTCAATAGTAAAAACTGGGCCATCAGTGTGGACG
GGAGTTGCGGGAGTATTACAGTGTGTGTTTGTGTTGGTT
Protein sequenceShow/hide protein sequence
MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRRLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWT
GVAGVLQCVFVLV