CuGenDBv2

Gene ID	MS018675
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Genome location	scaffold313:964212..964424
RNA-Seq Expression	MS018675
Synteny	MS018675
Gene Ontology terms	GO:0009507 - chloroplast (cellular component) GO:0016020 - membrane (cellular component) GO:0000166 - nucleotide binding (molecular function)
InterPro domains	IPR008543 - Uncharacterised protein family Ycf2

Homology

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GenBank top hits

e value

%identity

Alignment

ALF03345.1 Ycf2 [Cucumis sativus var. hardwickii]

1.0e-09

56.94

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Query:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN
        D VPKDELDMD+SNKI  LK+ P      F+YLFHL HD N +GYTLHH+ E ++RF+EM +L TL +++P+
Subjt:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN

ASY97525.1 Ycf2 [Cucumis sativus var. hardwickii]

1.0e-09

56.94

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Query:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN
        D VPKDELDMD+SNKI  LK+ P      F+YLFHL HD N +GYTLHH+ E ++RF+EM +L TL +++P+
Subjt:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN

Q2QD30.1 RecName: Full=Protein Ycf2 [Cucumis sativus]

1.0e-09

56.94

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Query:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN
        D VPKDELDMD+SNKI  LK+ P      F+YLFHL HD N +GYTLHH+ E ++RF+EM +L TL +++P+
Subjt:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN

YP_247643.1 Ycf2 [Cucumis sativus]

1.0e-09

56.94

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Query:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN
        D VPKDELDMD+SNKI  LK+ P      F+YLFHL HD N +GYTLHH+ E ++RF+EM +L TL +++P+
Subjt:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN

YP_247661.1 Ycf2 [Cucumis sativus]

1.0e-09

56.94

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Query:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN
        D VPKDELDMD+SNKI  LK+ P      F+YLFHL HD N +GYTLHH+ E ++RF+EM +L TL +++P+
Subjt:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN

TrEMBL top hits

e value

%identity

Alignment

A0A1X9Q181 Protein Ycf2

4.9e-10

56.94

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Query:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN
        D VPKDELDMD+SNKI  LK+ P      F+YLFHL HD N +GYTLHH+ E ++RF+EM +L TL +++P+
Subjt:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN

A0A218KG71 Protein Ycf2

4.9e-10

56.94

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Query:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN
        D VPKDELDMD+SNKI  LK+ P      F+YLFHL HD N +GYTLHH+ E ++RF+EM +L TL +++P+
Subjt:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN

A0A218KGA5 Protein Ycf2

4.9e-10

56.94

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Query:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN
        D VPKDELDMD+SNKI  LK+ P      F+YLFHL HD N +GYTLHH+ E ++RF+EM +L TL +++P+
Subjt:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN

A0A286SBA1 Protein Ycf2

4.9e-10

56.94

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Query:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN
        D VPKDELDMD+SNKI  LK+ P      F+YLFHL HD N +GYTLHH+ E ++RF+EM +L TL +++P+
Subjt:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN

A0A343UM94 Protein Ycf2

4.9e-10

56.94

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Query:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN
        D VPKDELDMD+SNKI  LK+ P      F+YLFHL HD N +GYTLHH+ E ++RF+EM +L TL +++P+
Subjt:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN

SwissProt top hits

e value

%identity

Alignment

A1XGT0 Protein Ycf2

3.3e-11

54.93

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Query:  DGVPKDELDMDNSNKIILKQIPFLYLFHFLYLFHLLHDLNK-GYTLHHNLE-QKRFREMVNLLTLGMSKPN
        D VPKDE DMD+SNK     I FL    F YLFHL HD N+ GYTLHH+ E +++F+EM +LLTL +++P+
Subjt:  DGVPKDELDMDNSNKIILKQIPFLYLFHFLYLFHLLHDLNK-GYTLHHNLE-QKRFREMVNLLTLGMSKPN

A6MMG6 Protein Ycf2

1.6e-10

56.94

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Query:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLNK-GYTLHHNLE-QKRFREMVNLLTLGMSKPN
        D VPKDE DM +SNKI  L + PF   F F YLFHL HD NK GYTLHH+ E ++RF+EM +L TL +++P+
Subjt:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLNK-GYTLHHNLE-QKRFREMVNLLTLGMSKPN

Q09FY5 Protein Ycf2

1.6e-10

54.93

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Query:  DGVPKDELDMDNSNKIILKQIPFLYLFHFLYLFHLLHDLNK-GYTLHHNLE-QKRFREMVNLLTLGMSKPN
        D VPKDE DMD+SNK     I FL    F  LFHL HD N+ GYTLHH+ E ++RF+EMV+L TL +++P+
Subjt:  DGVPKDELDMDNSNKIILKQIPFLYLFHFLYLFHLLHDLNK-GYTLHHNLE-QKRFREMVNLLTLGMSKPN

Q09WV7 Protein Ycf2

1.2e-10

54.93

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Query:  DGVPKDELDMDNSNKIILKQIPFLYLFHFLYLFHLLHDLNK-GYTLHHNLE-QKRFREMVNLLTLGMSKPN
        D VPKDELDMD+SNK     I FL    F  LFHL HD N+ GYTLHH+ E ++RF+EM +L TL +++P+
Subjt:  DGVPKDELDMDNSNKIILKQIPFLYLFHFLYLFHLLHDLNK-GYTLHHNLE-QKRFREMVNLLTLGMSKPN

Q2QD30 Protein Ycf2

1.3e-12

56.94

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Query:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN
        D VPKDELDMD+SNKI  LK+ P      F+YLFHL HD N +GYTLHH+ E ++RF+EM +L TL +++P+
Subjt:  DGVPKDELDMDNSNKI-ILKQIPFLYLFHFLYLFHLLHDLN-KGYTLHHNLE-QKRFREMVNLLTLGMSKPN

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

3.1e-09

51.43

Show/hide

Query:  DGVPKDELDMDNSNKIILKQIPFLYLFHFLYLFHLLHDLNK-GYTLHHNLEQKRFREMVNLLTLGMSKPN
        D VPKDELDMD+SNK     I FL    F  LFHL H+  + GYTL H  E+ RF+EM +L TL +++P+
Subjt:  DGVPKDELDMDNSNKIILKQIPFLYLFHFLYLFHLLHDLNK-GYTLHHNLEQKRFREMVNLLTLGMSKPN

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

3.1e-09

51.43

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Query:  DGVPKDELDMDNSNKIILKQIPFLYLFHFLYLFHLLHDLNK-GYTLHHNLEQKRFREMVNLLTLGMSKPN
        D VPKDELDMD+SNK     I FL    F  LFHL H+  + GYTL H  E+ RF+EM +L TL +++P+
Subjt:  DGVPKDELDMDNSNKIILKQIPFLYLFHFLYLFHLLHDLNK-GYTLHHNLEQKRFREMVNLLTLGMSKPN

Sequences

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CDS sequence

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GATGGGGTTCCAAAAGATGAACTAGATATGGATAATTCCAATAAAATTATTCTTAAACAAATACCCTTTTTATATTTATTTCATTTTTTATATTTATTTCATTTACTCCA
TGACCTAAATAAAGGATACACGTTACACCACAATCTTGAACAAAAGAGATTTCGAGAAATGGTAAACCTACTCACTCTAGGAATGTCTAAGCCGAAT

mRNA sequence

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Protein sequence

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DGVPKDELDMDNSNKIILKQIPFLYLFHFLYLFHLLHDLNKGYTLHHNLEQKRFREMVNLLTLGMSKPN

MS018675 (gene) of Bitter gourd (TR) v1 genome