CuGenDBv2

Gene ID	MS018679
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	nucleolin
Genome location	scaffold313:988196..988756
RNA-Seq Expression	MS018679
Synteny	MS018679
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6579085.1 hypothetical protein SDJN03_23533, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-69

80.81

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Query:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQ
        MDFRK   GSGN+DEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSS+AAAA RNPRPS    +SD  S+PP IENL VDGESQ
Subjt:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQ

Query:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD-------DDGDDESSSSDEDADDRRKERRKKKA
        SILGDDLA RFAALKASLPSS  PPPSS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPS++DD       DD D+E  SSDED DDR+KERRKKKA
Subjt:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD-------DDGDDESSSSDEDADDRRKERRKKKA

KAG7016610.1 hypothetical protein SDJN02_21720, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.7e-70

82.05

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Query:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQ
        MDFRK   GSGN+DEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSS+AAAA RNPRPS    +SD  S+PP IENL VDGESQ
Subjt:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQ

Query:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA
        SILGDDLA RFAALKASLPSS  PPPSS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPS++DD    DD D+E +SSDED DDR+KERRKKKA
Subjt:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA

XP_022141565.1 uncharacterized protein LOC111011897 [Momordica charantia]

1.4e-90

100

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Query:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILG
        MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILG
Subjt:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILG

Query:  DDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA
        DDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA
Subjt:  DDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA

XP_022939254.1 nucleolin [Cucurbita moschata]

8.9e-69

82.81

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Query:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQ
        MDFRK    SGN+DEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAA+ RNPRPS    +SD  S+PP IENL VDGESQ
Subjt:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQ

Query:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDES-SSSDEDADDRRKERRKKKA
        SILGDDLA RFAALKASLPSS  PPPSS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPS++DD+D DDE  +SSDED DDR+KERRKKKA
Subjt:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDES-SSSDEDADDRRKERRKKKA

XP_023550367.1 nucleolin [Cucurbita pepo subsp. pepo]

1.7e-67

81.03

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Query:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQ
        MDFRK   GSGN+DEQVEQLLQAAQDDLMLK ++DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAA+ RNPRPS    +SD  S+PP IENL VDGESQ
Subjt:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQ

Query:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA
        SILGDDLA RFAALKASLPSS  PPPSS+ NDVDS+DEEDEVEKLIQWAKDAARLDPSPPS++DD    DD D+E +SSDED DDR+KERRKKKA
Subjt:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E6L5 uncharacterized protein LOC103502866

2.1e-63

79.38

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Query:  MDFRKKAGGSGNDD--EQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSK-PPAIENLPVDG
        MD RKK  G GNDD  EQ+EQLLQAAQDDL+LKLTLDSHMSRVSPNYL SDLDRRFQALRSRPSS AAA PRNPR S    +SD  S+ PP IENL VDG
Subjt:  MDFRKKAGGSGNDD--EQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSK-PPAIENLPVDG

Query:  ESQSILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA
        ESQSILGDDLA RFAALKASLPSST PP SS+PNDVDS DEEDEVEKLIQWAKDAARLDPSPPS++DD+  ++E  SSDED +DR KERRKKKA
Subjt:  ESQSILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA

A0A5D3CTC3 Transcription initiation factor TFIID subunit 11 isoform X3

1.2e-63

79.9

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Query:  MDFRKKAGGSGNDD--EQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSK-PPAIENLPVDG
        MD RKK  G GNDD  EQ+EQLLQAAQDDLMLKLTLDSHMSRVSPNYL SDLDRRFQALRSRPSS AAA PRNPR S    +SD  S+ PP IENL VDG
Subjt:  MDFRKKAGGSGNDD--EQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSK-PPAIENLPVDG

Query:  ESQSILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA
        ESQSILGDDLA RFAALKASLPSST PP SS+PNDVDS DEEDEVEKLIQWAKDAARLDPSPPS++DD+  ++E  SSDED +DR KERRKKKA
Subjt:  ESQSILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA

A0A6J1CIG2 uncharacterized protein LOC111011897

6.8e-91

100

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Query:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILG
        MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILG
Subjt:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILG

Query:  DDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA
        DDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA
Subjt:  DDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA

A0A6J1FGM0 nucleolin

4.3e-69

82.81

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Query:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQ
        MDFRK    SGN+DEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAA+ RNPRPS    +SD  S+PP IENL VDGESQ
Subjt:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQ

Query:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDES-SSSDEDADDRRKERRKKKA
        SILGDDLA RFAALKASLPSS  PPPSS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPS++DD+D DDE  +SSDED DDR+KERRKKKA
Subjt:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDES-SSSDEDADDRRKERRKKKA

A0A6J1JTW4 glucosidase 2 subunit beta

3.1e-67

80.51

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Query:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQ
        MDFRK   GSGN+DEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAA   RNPR S    +SD  S+PP IENL VDGESQ
Subjt:  MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS----RSDLPSKPPAIENLPVDGESQ

Query:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA
        SILGDDLA RFAALKASLPSS  PPPSS+PNDVDS+DEEDEVEKLIQWAKDA RLDPSPPS++DD    DD D+E +SSDED DDR+KERRKKKA
Subjt:  SILGDDLATRFAALKASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDD----DDGDDESSSSDEDADDRRKERRKKKA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G24370.1 unknown protein

7.4e-21

43.45

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Query:  GNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILGDDLATRFAAL
        G ++++VEQLLQAAQD+++LKL++DSH SR S +YLD DL  RF AL+S+         +  RP     P     +E  P          +DL  RFAAL
Subjt:  GNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILGDDLATRFAAL

Query:  KASLPSSTPPPPSSMPNDV----DSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDD---DGDDESSSS
        K SLPS++      + +++    D   E+ EV+KLIQWA DAARLDPSP SD +     D DDE+ S+
Subjt:  KASLPSSTPPPPSSMPNDV----DSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDD---DGDDESSSS

Sequences

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CDS sequence

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ATGGATTTCAGAAAGAAGGCTGGGGGAAGCGGCAACGACGACGAACAAGTGGAGCAATTGCTGCAAGCTGCTCAGGACGATCTCATGCTCAAATTGACTCTCGATTCCCA
CATGTCTCGCGTATCCCCAAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTCAGATCGCGTCCTTCCTCCGCCGCCGCCGCCGCTCCACGCAATCCACGGC
CTTCTCGATCGGATTTGCCGTCGAAGCCACCGGCGATTGAAAATCTTCCTGTCGATGGCGAATCTCAGTCGATTCTCGGTGACGATCTCGCTACTAGATTCGCTGCTCTG
AAGGCGTCTTTGCCTTCCTCGACTCCTCCGCCTCCGTCGTCGATGCCTAACGACGTTGATAGCGAGGATGAAGAGGATGAGGTCGAGAAGTTGATTCAGTGGGCCAAGGA
TGCTGCTCGGCTCGATCCTTCACCGCCATCTGATCAAGACGACGACGACGGCGACGACGAGTCTAGTAGTTCCGATGAAGATGCCGACGATCGGAGGAAAGAACGTCGGA
AAAAGAAGGCG

mRNA sequence

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Protein sequence

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MDFRKKAGGSGNDDEQVEQLLQAAQDDLMLKLTLDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSRSDLPSKPPAIENLPVDGESQSILGDDLATRFAAL
KASLPSSTPPPPSSMPNDVDSEDEEDEVEKLIQWAKDAARLDPSPPSDQDDDDGDDESSSSDEDADDRRKERRKKKA

MS018679 (gene) of Bitter gourd (TR) v1 genome