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MS018695 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018695
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionphotosynthetic NDH subunit of subcomplex B 1, chloroplastic
Genome locationscaffold313:1135214..1135476
RNA-Seq ExpressionMS018695
SyntenyMS018695
Gene Ontology termsGO:0009773 - photosynthetic electron transport in photosystem I (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0010598 - NAD(P)H dehydrogenase complex (plastoquinone) (cellular component)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR044983 - Photosynthetic NDH subunit of subcomplex B 1, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058709.1 photosynthetic NDH subunit of subcomplex B 1 [Cucumis melo var. makuwa]5.1e-2776.09Show/hide
Query:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
        PY FLKFPQG+ VEIA LGLKLRG VR CCCVISGG   + LFFPAIQLL  DRY GVQIDVV SARGKQ  +  KNVRWSNVYD  DYFPE
Subjt:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
KAG6575629.1 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.7e-2775Show/hide
Query:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
        PY FLKFPQG+ VE+A LGLKLRG VR CCCVISGG   + LFFPAIQLL  DRY GVQIDVV SARGKQ  +  KNVRWSNVYD  DYFPE
Subjt:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
XP_008461180.1 PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis melo]5.1e-2776.09Show/hide
Query:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
        PY FLKFPQG+ VEIA LGLKLRG VR CCCVISGG   + LFFPAIQLL  DRY GVQIDVV SARGKQ  +  KNVRWSNVYD  DYFPE
Subjt:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
XP_022145001.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Momordica charantia]5.1e-2776.09Show/hide
Query:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
        PY FLKFPQG+ VEIA LGLKLRG VR CCCVISGG   + LFFPAIQLL  DRY GVQIDVV SARGKQ  +  KNVRWSNVYD  DYFPE
Subjt:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
XP_023548446.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita pepo subsp. pepo]6.7e-2775Show/hide
Query:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
        PY FLKFPQG+ VE+A LGLKLRG VR CCCVISGG   + LFFPAIQLL  DRY GVQIDVV SARGKQ  +  KNVRWSNVYD  DYFPE
Subjt:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
TrEMBL top hitse value%identityAlignment
A0A1S3CEK1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic2.5e-2776.09Show/hide
Query:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
        PY FLKFPQG+ VEIA LGLKLRG VR CCCVISGG   + LFFPAIQLL  DRY GVQIDVV SARGKQ  +  KNVRWSNVYD  DYFPE
Subjt:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
A0A5A7UYW0 Photosynthetic NDH subunit of subcomplex B 12.5e-2776.09Show/hide
Query:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
        PY FLKFPQG+ VEIA LGLKLRG VR CCCVISGG   + LFFPAIQLL  DRY GVQIDVV SARGKQ  +  KNVRWSNVYD  DYFPE
Subjt:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
A0A6J1CV27 photosynthetic NDH subunit of subcomplex B 1, chloroplastic2.5e-2776.09Show/hide
Query:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
        PY FLKFPQG+ VEIA LGLKLRG VR CCCVISGG   + LFFPAIQLL  DRY GVQIDVV SARGKQ  +  KNVRWSNVYD  DYFPE
Subjt:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
A0A6J1GNJ2 photosynthetic NDH subunit of subcomplex B 1, chloroplastic3.2e-2775Show/hide
Query:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
        PY FLKFPQG+ VE+A LGLKLRG VR CCCVISGG   + LFFPAIQLL  DRY GVQIDVV SARGKQ  +  KNVRWSNVYD  DYFPE
Subjt:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
A0A6J1JXN2 photosynthetic NDH subunit of subcomplex B 1, chloroplastic7.2e-2775Show/hide
Query:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
        PY FLKFPQG+ VEIA LGLKLRG VR CCCVISGG   + LFFP IQLL  DRY GVQIDVV SARGKQ  +  KNVRWSNVYD  DYFPE
Subjt:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
SwissProt top hitse value%identityAlignment
Q9S9N6 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic2.5e-2460.87Show/hide
Query:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
        PY FLKFP+G+ VE+A L LK+RG VR CCCVISGG   + LFFP IQ L+ DRY GVQ+D++ + RGKQ  +  KNVRW+NVYD  D++PE
Subjt:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
Arabidopsis top hitse value%identityAlignment
AT1G15980.1 NDH-dependent cyclic electron flow 11.8e-2560.87Show/hide
Query:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE
        PY FLKFP+G+ VE+A L LK+RG VR CCCVISGG   + LFFP IQ L+ DRY GVQ+D++ + RGKQ  +  KNVRW+NVYD  D++PE
Subjt:  PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGG---HFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKK--KNVRWSNVYDMGDYFPE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCCTATGTGTTTTTGAAATTTCCTCAGGGGCACAGGGTGGAGATCGCCTGTTTGGGTCTAAAACTCCGGGGTTATGTCCGGTGGTGCTGCTGCGTGATCTCCGGCGGACA
CTTCCTTTTCTTTCCGGCCATTCAATTATTGGTCGTGGATCGGTACTCGGGAGTCCAAATCGATGTGGTGGTTTCGGCCAGGGGAAAACAAAACAAGAAAAAAAATGTGA
GATGGTCTAATGTTTACGATATGGGTGATTATTTTCCTGAA
mRNA sequenceShow/hide mRNA sequence
CCCTATGTGTTTTTGAAATTTCCTCAGGGGCACAGGGTGGAGATCGCCTGTTTGGGTCTAAAACTCCGGGGTTATGTCCGGTGGTGCTGCTGCGTGATCTCCGGCGGACA
CTTCCTTTTCTTTCCGGCCATTCAATTATTGGTCGTGGATCGGTACTCGGGAGTCCAAATCGATGTGGTGGTTTCGGCCAGGGGAAAACAAAACAAGAAAAAAAATGTGA
GATGGTCTAATGTTTACGATATGGGTGATTATTTTCCTGAA
Protein sequenceShow/hide protein sequence
PYVFLKFPQGHRVEIACLGLKLRGYVRWCCCVISGGHFLFFPAIQLLVVDRYSGVQIDVVVSARGKQNKKKNVRWSNVYDMGDYFPE