CuGenDBv2

Gene ID	MS018712
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	U3 small nucleolar ribonucleoprotein protein IMP4
Genome location	scaffold313:1293727..1301386
RNA-Seq Expression	MS018712
Synteny	MS018712
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0016363 - nuclear matrix (cellular component) GO:0032040 - small-subunit processome (cellular component) GO:0034457 - Mpp10 complex (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0030515 - snoRNA binding (molecular function) GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domains	IPR007109 - Brix domain IPR044281 - U3 snoRNP protein/Ribosome production factor 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6579112.1 U3 small nucleolar ribonucleoprotein IMP4, partial [Cucurbita argyrosperma subsp. sororia]

8.5e-159

95.9

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEEAALRKEIELEDD TAVPRTHIDDEYAN S++DPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD
        RTAN+LKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEK GG KSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKR+FLGD
Subjt:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD

KAG7016636.1 U3 small nucleolar ribonucleoprotein IMP4, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.5e-159

95.9

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEEAALRKEIELEDD TAVPRTHIDDEYAN S++DPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD
        RTAN+LKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEK GG KSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKR+FLGD
Subjt:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD

XP_022157893.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Momordica charantia]

1.5e-163

100

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Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD
        RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD
Subjt:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD

XP_022939256.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Cucurbita moschata]

8.5e-159

95.9

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEEAALRKEIELEDD TAVPRTHIDDEYAN S++DPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD
        RTAN+LKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEK GG KSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKR+FLGD
Subjt:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD

XP_022993779.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Cucurbita maxima]

2.2e-159

96.25

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEEAALRKEIELEDD TAVPRTHIDDEYAN S++DPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD
        RTAN+LKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEKQGG KSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKR+FLGD
Subjt:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPI1 U3 small nucleolar ribonucleoprotein protein IMP4

3.5e-158

96.58

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEEAALRKEIELED+ TAVPRTHIDDEYAN SEVDPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGLLNVVTRHEI+DKKAMGTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLG
        RTANILKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEK GG KSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKR FLG
Subjt:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLG

A0A5D3BJ53 U3 small nucleolar ribonucleoprotein IMP4

3.5e-158

96.58

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEEAALRKEIELED+ TAVPRTHIDDEYAN SEVDPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGLLNVVTRHEI+DKKAMGTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLG
        RTANILKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEK GG KSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKR FLG
Subjt:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLG

A0A6J1DUL2 U3 small nucleolar ribonucleoprotein protein IMP4

7.3e-164

100

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD
        RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD
Subjt:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD

A0A6J1FFE4 U3 small nucleolar ribonucleoprotein protein IMP4

4.1e-159

95.9

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEEAALRKEIELEDD TAVPRTHIDDEYAN S++DPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD
        RTAN+LKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEK GG KSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKR+FLGD
Subjt:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD

A0A6J1K117 U3 small nucleolar ribonucleoprotein protein IMP4

1.1e-159

96.25

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEEAALRKEIELEDD TAVPRTHIDDEYAN S++DPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
        AKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD
        RTAN+LKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEKQGG KSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKR+FLGD
Subjt:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD

SwissProt top hits

e value

%identity

Alignment

Q0VD01 U3 small nucleolar ribonucleoprotein protein IMP4

5.7e-89

57.19

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
        MLRR  RLRREYLYRK+ E  ER   E+K K+R ALEE + IPTELR E  AL+  +E +D        H+DDEY      DPK++ITTSRDPS+ L  F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
        AKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLIVSHLPFGPTAYF L NVV RH+I D   +GT  EA PH+I++ F+++LG+
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRKFL
        R ++IL++LFPVPK D++RVITFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++Q   A  EW   PY  T  KR FL
Subjt:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRKFL

Q5PQR5 U3 small nucleolar ribonucleoprotein protein IMP4

7.4e-89

56.85

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
        MLRR  RLRREYLYRK+ E  +R + EKK +++ ALEE + IPTELR E  AL+  +E +D       +H+DDEY      DPK++ITTSRDPS+ L  F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
        AKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLIVSHLPFGPTAYF L NVV RH+I D   +GTM EA PH+I + F+++LG+
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRKFL
        R ++IL++LFPVPK D+ RVITFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++Q   A  EW   PY  T +KR FL
Subjt:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRKFL

Q5R947 U3 small nucleolar ribonucleoprotein protein IMP4

1.3e-88

56.85

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
        MLRR  RLRREYLYRK+ E  +R   E+K ++R ALEE + IPTELR E  AL+  +E +D       +H+DDEY      DPK++ITTSRDPS+ L  F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
        AKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLIVSHLPFGPTAYF L NVV RH+I D   +GTM EA PH+I + F+++LG+
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRKFL
        R ++IL++LFPVPK D+ RVITFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++Q   A  EW   PY  T +KR FL
Subjt:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRKFL

Q8VHZ7 U3 small nucleolar ribonucleoprotein protein IMP4

7.4e-89

56.85

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
        MLRR  RLRREYLYRK+ E  +R + EKK +++ ALEE + IPTELR E  AL+  +E +D       +H+DDEY      DPK++ITTSRDPS+ L  F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
        AKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLIVSHLPFGPTAYF L NVV RH+I D   +GTM EA PH+I + F+++LG+
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRKFL
        R ++IL++LFPVPK D+ RVITFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++Q   A  EW   PY  T +KR FL
Subjt:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRKFL

Q96G21 U3 small nucleolar ribonucleoprotein protein IMP4

1.3e-88

56.85

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Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
        MLRR  RLRREYLYRK+ E  +R   E+K ++R ALEE + IPTELR E  AL+  +E +D       +H+DDEY      DPK++ITTSRDPS+ L  F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
        AKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLIVSHLPFGPTAYF L NVV RH+I D   +GTM EA PH+I + F+++LG+
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRKFL
        R ++IL++LFPVPK D+ RVITFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++Q   A  EW   PY  T +KR FL
Subjt:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQ-TEAQNEWVIRPYMKTTKKRKFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G63780.1 Ribosomal RNA processing Brix domain protein

1.3e-133

76.53

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Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF
        M RR +RL++EY+YRKSLEG ER +YE+KR IREAL+EGKPIPTELRN EA LR+EI+LED NTAVPR+HIDDEYAN +E DPKIL+TTSR+PSAPL +F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE
         KELK VFPN+QR+NRG QVISEIIET R+H+FTDVILVHEHRGVPDGLI+SHLPFGPTAYFGLLNVVTRH+I DKK++G MPE YPH+I NNFTT++G+
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGE

Query:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEK-QGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD
        R  NILKH+FP PK D KR++TF+NQSDYISFR+H+Y+K +GG KSIELKEIGPRFELRLYQ+KLGTV+Q EA+ EWVIRPYM T+KKRKF+G+
Subjt:  RTANILKHLFPVPKPDTKRVITFANQSDYISFRHHIYEK-QGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD

AT4G01560.1 Ribosomal RNA processing Brix domain protein

2.3e-37

35.18

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Query:  RREYLYRKSLEGKERLLYEKKRKIR-------EALEEG-----KPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAP
        +R  +Y K    K+    EK++KIR        ALE G     K IP  + N   +       +D+         +       E+ PK+L+TT R  S  
Subjt:  RREYLYRKSLEGKERLLYEKKRKIR-------EALEEG-----KPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAP

Query:  LTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTT
              EL  V PN+    RG   + +I+E     +FT +I+VH +R  PD L++  LP GPTA+F L N+V R +IK+    G      P ++LNNFTT
Subjt:  LTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTT

Query:  KLGERTANILKHLFPVPKPD--TKRVITFANQSDYISFRHHIY--------EKQGGVKSIE--LKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKT
        +LG R     + LFP P P+   +RV+TF NQ D+I FRHH Y          +G  ++I+  L+E GPRF L+L  ++ GT D    + EWV +P M T
Subjt:  KLGERTANILKHLFPVPKPD--TKRVITFANQSDYISFRHHIY--------EKQGGVKSIE--LKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKT

Query:  TKKRKFL
        +++R FL
Subjt:  TKKRKFL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTTGCGAAGAAACATTCGGCTGAGGAGGGAGTATTTGTACAGAAAGAGTTTAGAAGGCAAGGAGCGTTTGCTTTATGAGAAGAAGCGGAAGATTAGAGAAGCCCTTGA
AGAGGGAAAACCTATTCCTACTGAGCTTCGGAATGAGGAGGCAGCGCTTCGTAAAGAAATTGAACTCGAGGATGATAATACAGCAGTCCCGAGGACCCACATTGATGATG
AGTATGCAAATACTTCCGAAGTTGATCCAAAAATTTTGATAACTACATCTCGGGATCCAAGTGCACCTTTGACACAGTTTGCAAAGGAATTAAAAATTGTGTTTCCCAAT
GCTCAACGAATGAATCGTGGTGGTCAGGTTATCTCAGAGATTATAGAGACCTGTCGTGCTCACGAGTTCACTGACGTTATTTTAGTTCATGAACATCGTGGTGTGCCAGA
TGGTTTAATTGTCAGCCATTTACCTTTTGGTCCAACTGCATATTTCGGATTGTTGAATGTGGTGACGAGACATGAAATTAAGGACAAAAAGGCTATGGGAACAATGCCTG
AGGCCTATCCGCACATAATTTTGAACAATTTTACCACAAAGTTGGGTGAAAGGACAGCCAACATCTTAAAGCATCTATTTCCTGTGCCGAAGCCAGATACTAAACGTGTG
ATTACTTTTGCCAATCAGTCTGATTATATTTCATTCAGGCATCATATTTATGAGAAGCAAGGGGGTGTTAAATCAATTGAGCTGAAGGAGATCGGTCCTCGGTTTGAATT
GCGATTGTATCAGATCAAGTTAGGAACTGTTGATCAAACGGAAGCTCAGAATGAATGGGTGATTAGGCCATACATGAAAACAACCAAGAAACGCAAGTTTCTTGGTGAT

mRNA sequence

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Protein sequence

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MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPIPTELRNEEAALRKEIELEDDNTAVPRTHIDDEYANTSEVDPKILITTSRDPSAPLTQFAKELKIVFPN
AQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRV
ITFANQSDYISFRHHIYEKQGGVKSIELKEIGPRFELRLYQIKLGTVDQTEAQNEWVIRPYMKTTKKRKFLGD

MS018712 (gene) of Bitter gourd (TR) v1 genome