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MS018735 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018735
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S16, chloroplastic
Genome locationscaffold313:1572306..1572446
RNA-Seq ExpressionMS018735
SyntenyMS018735
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000307 - Ribosomal protein S16
IPR023803 - Ribosomal protein S16 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QXJ41186.1 ribosomal protein S16 [Hydrangea febrifuga]5.8e-1795.74Show/hide
Query:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
        REGR LRKVGFYDPIKNQTYLNVPAILYFLEK AQPTGTVHDILKKA
Subjt:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
YP_009379421.1 ribosomal protein S16 [Hydrangea serrata]5.8e-1795.74Show/hide
Query:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
        REGR LRKVGFYDPIKNQTYLNVPAILYFLEK AQPTGTVHDILKKA
Subjt:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
YP_009674373.1 ribosomal protein S16 [Siraitia grosvenorii]5.8e-1795.74Show/hide
Query:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
        REGR LRKVGFYDPIKNQTYLNVPAILYFLEK AQPTGTVHDILKKA
Subjt:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
YP_009698007.1 ribosomal protein S16 [Cornus peruviana]5.8e-1795.74Show/hide
Query:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
        REGR LRKVGFYDPIKNQTYLNVPAILYFLEK AQPTGTVHDILKKA
Subjt:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
YP_009698347.1 ribosomal protein S16 [Hydrangea paniculata]5.8e-1795.74Show/hide
Query:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
        REGR LRKVGFYDPIKNQTYLNVPAILYFLEK AQPTGTVHDILKKA
Subjt:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
TrEMBL top hitse value%identityAlignment
A0A1S4ETZ1 30S ribosomal protein S16, chloroplastic2.8e-1795.74Show/hide
Query:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
        REGR LRKVGFYDPIKNQTYLNVPAILYFLEK AQPTGTVHDILKKA
Subjt:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
A0A1X9Q1R7 30S ribosomal protein S16, chloroplastic2.8e-1795.74Show/hide
Query:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
        REGR LRKVGFYDPIKNQTYLNVPAILYFLEK AQPTGTVHDILKKA
Subjt:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
A0A218KG12 30S ribosomal protein S16, chloroplastic2.8e-1795.74Show/hide
Query:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
        REGR LRKVGFYDPIKNQTYLNVPAILYFLEK AQPTGTVHDILKKA
Subjt:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
A0A5C0QF08 30S ribosomal protein S16, chloroplastic2.8e-1795.74Show/hide
Query:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
        REGR LRKVGFYDPIKNQTYLNVPAILYFLEK AQPTGTVHDILKKA
Subjt:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
A0A6H0ETM9 30S ribosomal protein S16, chloroplastic2.8e-1795.74Show/hide
Query:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
        REGR LRKVGFYDPIKNQTYLNVPAILYFLEK AQPTGTVHDILKKA
Subjt:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
SwissProt top hitse value%identityAlignment
Q09X35 30S ribosomal protein S16, chloroplastic8.4e-1991.49Show/hide
Query:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
        REGR+LRKVGFYDPIKNQTYLNVP ILYFLEK AQPTGTVHDI KKA
Subjt:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
Q1KXX7 30S ribosomal protein S16, chloroplastic6.4e-1993.62Show/hide
Query:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
        REGR LRKVGFYDPIKNQTYLNVPAILYFLEK AQPTGTV DILKKA
Subjt:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
Q2QDA6 30S ribosomal protein S16, chloroplastic7.6e-2095.74Show/hide
Query:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
        REGR LRKVGFYDPIKNQTYLNVPAILYFLEK AQPTGTVHDILKKA
Subjt:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
Q332Z6 30S ribosomal protein S16, chloroplastic6.4e-1993.62Show/hide
Query:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
        REGR LRKVGFYDPIKNQTYLNVPAILYFLEK AQPTGTV DILKKA
Subjt:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
Q6EW66 30S ribosomal protein S16, chloroplastic3.8e-1993.62Show/hide
Query:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
        REGR LRKVGFYDPIKNQTYLNVPAILYFLEK AQPTGTVHDI KKA
Subjt:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
Arabidopsis top hitse value%identityAlignment
ATCG00050.1 ribosomal protein S163.7e-1474.47Show/hide
Query:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA
        REGR L KVGFYDPI NQT+LN+ AIL FL+K AQPT T HDI KKA
Subjt:  REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGAGAAGGAAGGAGTCTTCGTAAAGTGGGTTTTTATGATCCGATAAAGAATCAAACATATTTAAATGTTCCTGCTATTCTATATTTCCTTGAAAAAGACGCTCAACCTAC
CGGAACTGTTCATGATATTTTAAAGAAGGCA
mRNA sequenceShow/hide mRNA sequence
AGAGAAGGAAGGAGTCTTCGTAAAGTGGGTTTTTATGATCCGATAAAGAATCAAACATATTTAAATGTTCCTGCTATTCTATATTTCCTTGAAAAAGACGCTCAACCTAC
CGGAACTGTTCATGATATTTTAAAGAAGGCA
Protein sequenceShow/hide protein sequence
REGRSLRKVGFYDPIKNQTYLNVPAILYFLEKDAQPTGTVHDILKKA