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MS018747 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018747
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionIleal sodium/bile acid cotransporter, putative
Genome locationscaffold313:1668431..1668928
RNA-Seq ExpressionMS018747
SyntenyMS018747
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050246.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa]1.0e-3965.19Show/hide
Query:  MNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQ---SLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAG
        MN L SFITAINERN  I+S             LPICI MQRP PA SS+   ++GKTILGLTFQAVLALFI+ P+S P L T LF AAVLISFAVSFAG
Subjt:  MNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQ---SLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAG

Query:  LFLQTAYPRMALLFEKVSALFAAIGVCIIASLLVHQNFAWICLLACAFTFIVFLLSFK
        +FLQ  +PR+ALLFEK+ AL AAIGVCI+ASLL+HQNFAWI  LA  F+ + F+LSF+
Subjt:  LFLQTAYPRMALLFEKVSALFAAIGVCIIASLLVHQNFAWICLLACAFTFIVFLLSFK

KGN49803.1 hypothetical protein Csa_004681 [Cucumis sativus]3.8e-3961.54Show/hide
Query:  MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQ---SLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAA
        M S+ QQ S+DMN L S IT+INERN  I+              LPICI MQ   PA SS+   ++G TILGLTFQAVLALFI+  +S P L T LFGAA
Subjt:  MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQ---SLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAA

Query:  VLISFAVSFAGLFLQTAYPRMALLFEKVSALFAAIGVCIIASLLVHQNFAWICLLACAFTFIVFLLSFK
        VLISFAVSF G+FLQ  +PR+ALLFEK+ AL AAIGVCI+ASLL+HQNFAWI  LAC F+ + FLLSF+
Subjt:  VLISFAVSFAGLFLQTAYPRMALLFEKVSALFAAIGVCIIASLLVHQNFAWICLLACAFTFIVFLLSFK

KGN49806.1 hypothetical protein Csa_004683 [Cucumis sativus]3.5e-3253.57Show/hide
Query:  MAST-PQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQSLGKTILGLTFQAVLALFISL-PSSPPQLPTLLFGAAV
        MA T P + S+DMN L+S I A+  RN GISS TWGG     SDCLPI I+MQRP P  S Q  G T L LTFQA++ LF+SL PSS   LP+ LF A +
Subjt:  MAST-PQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQSLGKTILGLTFQAVLALFISL-PSSPPQLPTLLFGAAV

Query:  LISFAVSFAGLFLQTAYPRMALLFEKVSALFAAIGVCIIASLLVHQNFAWICLLACAFTFIVFLLSFK
        L SF  S+ G+ LQ  +P+ A L +   ALFAAIG CII SLL++ NF WIC LA       F++SFK
Subjt:  LISFAVSFAGLFLQTAYPRMALLFEKVSALFAAIGVCIIASLLVHQNFAWICLLACAFTFIVFLLSFK

KGN49808.1 hypothetical protein Csa_004650 [Cucumis sativus]1.6e-4064.12Show/hide
Query:  MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPP--PAKSSQSLGKTILGLTFQAVLALFISL-PSSPPQLPTLLFGAA
        MAST  QTS+DM+A SSFI  I++RN G+      G   TPS+CLP+ IRMQ+ P   A SSQ LGK IL L+FQAVLALFIS  P+SPP L    F AA
Subjt:  MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPP--PAKSSQSLGKTILGLTFQAVLALFISL-PSSPPQLPTLLFGAA

Query:  VLISFAVSFAGLFLQTAYPRMALLFEKVSALFAAIGVCIIAS-LLVHQNFAWICLLACAFTFIVFLLSFK
        V ISFAVSFA LFL  ++PR A LFEKV ALF+A GVC IAS LLVHQNFAWIC +AC F+ IVF LSFK
Subjt:  VLISFAVSFAGLFLQTAYPRMALLFEKVSALFAAIGVCIIAS-LLVHQNFAWICLLACAFTFIVFLLSFK

XP_022146444.1 uncharacterized protein LOC111015658 [Momordica charantia]2.6e-59100Show/hide
Query:  MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLI
        MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLI
Subjt:  MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLI

Query:  SFAVSFAGLFLQTAYPRMALLFEK
        SFAVSFAGLFLQTAYPRMALLFEK
Subjt:  SFAVSFAGLFLQTAYPRMALLFEK

TrEMBL top hitse value%identityAlignment
A0A0A0KJN8 Uncharacterized protein1.9e-3961.54Show/hide
Query:  MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQ---SLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAA
        M S+ QQ S+DMN L S IT+INERN  I+              LPICI MQ   PA SS+   ++G TILGLTFQAVLALFI+  +S P L T LFGAA
Subjt:  MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQ---SLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAA

Query:  VLISFAVSFAGLFLQTAYPRMALLFEKVSALFAAIGVCIIASLLVHQNFAWICLLACAFTFIVFLLSFK
        VLISFAVSF G+FLQ  +PR+ALLFEK+ AL AAIGVCI+ASLL+HQNFAWI  LAC F+ + FLLSF+
Subjt:  VLISFAVSFAGLFLQTAYPRMALLFEKVSALFAAIGVCIIASLLVHQNFAWICLLACAFTFIVFLLSFK

A0A0A0KJP2 Uncharacterized protein7.5e-4164.12Show/hide
Query:  MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPP--PAKSSQSLGKTILGLTFQAVLALFISL-PSSPPQLPTLLFGAA
        MAST  QTS+DM+A SSFI  I++RN G+      G   TPS+CLP+ IRMQ+ P   A SSQ LGK IL L+FQAVLALFIS  P+SPP L    F AA
Subjt:  MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPP--PAKSSQSLGKTILGLTFQAVLALFISL-PSSPPQLPTLLFGAA

Query:  VLISFAVSFAGLFLQTAYPRMALLFEKVSALFAAIGVCIIAS-LLVHQNFAWICLLACAFTFIVFLLSFK
        V ISFAVSFA LFL  ++PR A LFEKV ALF+A GVC IAS LLVHQNFAWIC +AC F+ IVF LSFK
Subjt:  VLISFAVSFAGLFLQTAYPRMALLFEKVSALFAAIGVCIIAS-LLVHQNFAWICLLACAFTFIVFLLSFK

A0A0A0KQ03 Uncharacterized protein1.7e-3253.57Show/hide
Query:  MAST-PQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQSLGKTILGLTFQAVLALFISL-PSSPPQLPTLLFGAAV
        MA T P + S+DMN L+S I A+  RN GISS TWGG     SDCLPI I+MQRP P  S Q  G T L LTFQA++ LF+SL PSS   LP+ LF A +
Subjt:  MAST-PQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQSLGKTILGLTFQAVLALFISL-PSSPPQLPTLLFGAAV

Query:  LISFAVSFAGLFLQTAYPRMALLFEKVSALFAAIGVCIIASLLVHQNFAWICLLACAFTFIVFLLSFK
        L SF  S+ G+ LQ  +P+ A L +   ALFAAIG CII SLL++ NF WIC LA       F++SFK
Subjt:  LISFAVSFAGLFLQTAYPRMALLFEKVSALFAAIGVCIIASLLVHQNFAWICLLACAFTFIVFLLSFK

A0A5A7U7U1 Putative Ileal sodium/bile acid cotransporter4.9e-4065.19Show/hide
Query:  MNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQ---SLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAG
        MN L SFITAINERN  I+S             LPICI MQRP PA SS+   ++GKTILGLTFQAVLALFI+ P+S P L T LF AAVLISFAVSFAG
Subjt:  MNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQ---SLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAG

Query:  LFLQTAYPRMALLFEKVSALFAAIGVCIIASLLVHQNFAWICLLACAFTFIVFLLSFK
        +FLQ  +PR+ALLFEK+ AL AAIGVCI+ASLL+HQNFAWI  LA  F+ + F+LSF+
Subjt:  LFLQTAYPRMALLFEKVSALFAAIGVCIIASLLVHQNFAWICLLACAFTFIVFLLSFK

A0A6J1CY58 uncharacterized protein LOC1110156581.2e-59100Show/hide
Query:  MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLI
        MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLI
Subjt:  MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLI

Query:  SFAVSFAGLFLQTAYPRMALLFEK
        SFAVSFAGLFLQTAYPRMALLFEK
Subjt:  SFAVSFAGLFLQTAYPRMALLFEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAACTCCACAACAGACCTCTGTGGATATGAATGCACTCTCTTCCTTTATCACTGCAATCAACGAAAGAAATCTTGGAATCAGCAGCTTTACCTGGGGAGGGGG
AACATCCACACCATCAGATTGCCTACCAATTTGCATCAGAATGCAGAGGCCACCACCAGCCAAGAGCTCTCAGAGCCTTGGGAAGACGATTCTTGGTCTTACCTTTCAGG
CAGTTCTAGCCTTGTTCATCAGCTTACCCAGTTCACCTCCGCAACTCCCTACACTTCTTTTTGGAGCTGCCGTGTTGATCAGCTTTGCAGTTTCGTTTGCTGGACTTTTC
CTTCAAACTGCATACCCGAGAATGGCGCTTTTGTTTGAAAAGGTCAGTGCTCTTTTTGCTGCAATTGGTGTCTGCATCATAGCTAGTCTTCTTGTCCATCAGAACTTCGC
TTGGATCTGTTTGCTGGCATGTGCCTTCACCTTCATAGTCTTTCTTCTATCATTCAAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAACTCCACAACAGACCTCTGTGGATATGAATGCACTCTCTTCCTTTATCACTGCAATCAACGAAAGAAATCTTGGAATCAGCAGCTTTACCTGGGGAGGGGG
AACATCCACACCATCAGATTGCCTACCAATTTGCATCAGAATGCAGAGGCCACCACCAGCCAAGAGCTCTCAGAGCCTTGGGAAGACGATTCTTGGTCTTACCTTTCAGG
CAGTTCTAGCCTTGTTCATCAGCTTACCCAGTTCACCTCCGCAACTCCCTACACTTCTTTTTGGAGCTGCCGTGTTGATCAGCTTTGCAGTTTCGTTTGCTGGACTTTTC
CTTCAAACTGCATACCCGAGAATGGCGCTTTTGTTTGAAAAGGTCAGTGCTCTTTTTGCTGCAATTGGTGTCTGCATCATAGCTAGTCTTCTTGTCCATCAGAACTTCGC
TTGGATCTGTTTGCTGGCATGTGCCTTCACCTTCATAGTCTTTCTTCTATCATTCAAG
Protein sequenceShow/hide protein sequence
MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLF
LQTAYPRMALLFEKVSALFAAIGVCIIASLLVHQNFAWICLLACAFTFIVFLLSFK