CuGenDBv2

Gene ID	MS018761
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ribonuclease P protein subunit p38
Genome location	scaffold313:1754850..1757767
RNA-Seq Expression	MS018761
Synteny	MS018761
Gene Ontology terms	GO:0005840 - ribosome (cellular component)
InterPro domains	IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45 IPR029064 - 50S ribosomal protein L30e-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6579150.1 hypothetical protein SDJN03_23598, partial [Cucurbita argyrosperma subsp. sororia]

4.1e-51

88.89

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Query:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL
        REIKRAR LNAESLPEKIWLKKQFA+GVNEVTRVLERMTPS DSARI+NPNYKACTVRLQAILL  DCNPRWLTNH+P+LA+SR VPL+LVKDKEGSLRL
Subjt:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL

Query:  GELVNLKTAIAIGIKVS
        GELVNLKTAIAIGIK +
Subjt:  GELVNLKTAIAIGIKVS

XP_022146401.1 ribonuclease P protein subunit p38 [Momordica charantia]

2.8e-55

96.58

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Query:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL
        REIKRARLLNAESLP KIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLL+KDKEGSLRL
Subjt:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL

Query:  GELVNLKTAIAIGIKVS
        GELVNLKTAIAIGIK +
Subjt:  GELVNLKTAIAIGIKVS

XP_022938626.1 ribonuclease P protein subunit p38 [Cucurbita moschata]

4.9e-52

89.74

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Query:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL
        REIKRAR LNAESLPEKIWLKKQFA+GVNEVTRVLERMTPSGDSARI+NPNYKACTVRLQAILL  DCNPRWLTNH+P+LA+SR VPL+LVKDKEGSLRL
Subjt:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL

Query:  GELVNLKTAIAIGIKVS
        GELVNLKTAIAIGIK +
Subjt:  GELVNLKTAIAIGIKVS

XP_023549838.1 ribonuclease P protein subunit p38 [Cucurbita pepo subsp. pepo]

9.2e-51

88.03

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Query:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL
        REIKRAR LNAE+LPEKIWLKKQFA+GVNEVTRVLERMTPS DSARI+NPNYKACTVRLQAILL  DCNPRWLTNH+P+LA+SR VPL+LVKDKEGSLRL
Subjt:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL

Query:  GELVNLKTAIAIGIKVS
        GELVNLKTAIAIGIK +
Subjt:  GELVNLKTAIAIGIKVS

XP_038875290.1 ribonuclease P protein subunit p38 [Benincasa hispida]

7.0e-51

87.18

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Query:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL
        REIK AR LNAESLPEKIWLKKQFA+GVNEVTRVLERMTPSGDSARIMNPNYKACTV+LQA+LL  +CNPRWLTNH+P+LA+SR VPL+LVKDKEGSLRL
Subjt:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL

Query:  GELVNLKTAIAIGIKVS
        GELVNLKTAIAIGIK +
Subjt:  GELVNLKTAIAIGIKVS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CQV2 ribonuclease P protein subunit p38 isoform X5

4.6e-48

85.22

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Query:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL
        REIK AR LNAESLPEK WLKKQFA+GVNEVTR LERMTP GDSAR+MNPNYKAC V+LQAILL  +CNPRWLTNH+P LA+SR VPL+LVKDKEGSLRL
Subjt:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL

Query:  GELVNLKTAIAIGIK
        GELVNLKTAIAIGIK
Subjt:  GELVNLKTAIAIGIK

A0A1S3CR39 ribonuclease P protein subunit p38 isoform X6

4.6e-48

85.22

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Query:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL
        REIK AR LNAESLPEK WLKKQFA+GVNEVTR LERMTP GDSAR+MNPNYKAC V+LQAILL  +CNPRWLTNH+P LA+SR VPL+LVKDKEGSLRL
Subjt:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL

Query:  GELVNLKTAIAIGIK
        GELVNLKTAIAIGIK
Subjt:  GELVNLKTAIAIGIK

A0A6J1CZ90 ribonuclease P protein subunit p38

1.3e-55

96.58

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Query:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL
        REIKRARLLNAESLP KIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLL+KDKEGSLRL
Subjt:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL

Query:  GELVNLKTAIAIGIKVS
        GELVNLKTAIAIGIK +
Subjt:  GELVNLKTAIAIGIKVS

A0A6J1FDN9 ribonuclease P protein subunit p38

2.4e-52

89.74

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Query:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL
        REIKRAR LNAESLPEKIWLKKQFA+GVNEVTRVLERMTPSGDSARI+NPNYKACTVRLQAILL  DCNPRWLTNH+P+LA+SR VPL+LVKDKEGSLRL
Subjt:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL

Query:  GELVNLKTAIAIGIKVS
        GELVNLKTAIAIGIK +
Subjt:  GELVNLKTAIAIGIKVS

A0A6J1K3C5 ribonuclease P protein subunit p38

1.1e-49

89.57

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Query:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL
        REIKRAR LNA+SLPEKIWLKKQFA+GVNEVTRVLERMTPS DSAR MNPNYKACTVRLQAILL  DCNPRWLTNH+P+LA+SR VPL+LVKDKEGSLRL
Subjt:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRL

Query:  GELVNLKTAIAIGIK
        GELVNLKTAIAIGIK
Subjt:  GELVNLKTAIAIGIK

SwissProt top hits

e value

%identity

Alignment

P78345 Ribonuclease P protein subunit p38

2.3e-04

33.33

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Query:  LKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRLGELVNLKTAIAIGIK
        ++KQ A+GVNEVTR LER                     L  +L+     P  +T+HL  L+LSR+VP   V     S R+  ++ LK  +A+  K
Subjt:  LKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRLGELVNLKTAIAIGIK

Q80UU2 Ribonuclease P protein subunit p38

6.7e-04

32.29

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Query:  IWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRLGELVNLKTAIAIG
        + ++KQ  +GVNEVTR LER                     L  +L+     P  +T+HL  L+LSR VP   V   + S R+  ++ LK  +A+G
Subjt:  IWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRLGELVNLKTAIAIG

Arabidopsis top hits

e value

%identity

Alignment

AT4G01790.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

7.8e-32

60.34

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Query:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKD-KEGSLR
        R I+ ++L N  SLPEKIWLKKQ A+G+NEVTRVLERM P+  S +  NP       +LQ ++L  DC PR LT H+P LA SRNVP+L V+D K  SLR
Subjt:  REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKD-KEGSLR

Query:  LGELVNLKTAIAIGIK
        LGELV LKTA+AIGIK
Subjt:  LGELVNLKTAIAIGIK

Sequences

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CDS sequence

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AGGGAGATAAAGAGAGCAAGACTTCTGAATGCGGAATCCTTGCCGGAAAAAATTTGGCTTAAGAAACAATTTGCAGTTGGAGTTAATGAGGTTACTAGAGTTCTTGAACG
GATGACGCCAAGTGGAGATTCTGCTCGCATAATGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGCTATACTGTTAGCAGGTGATTGCAACCCTCGATGGCTGA
CAAACCATCTCCCAACCTTGGCCTTGTCTAGGAACGTACCGTTGCTACTCGTGAAAGATAAAGAAGGATCTTTAAGGTTAGGTGAACTTGTTAACCTTAAAACAGCAATT
GCAATTGGAATAAAGGTGAGTAGAAAATAC

mRNA sequence

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Protein sequence

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REIKRARLLNAESLPEKIWLKKQFAVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSRNVPLLLVKDKEGSLRLGELVNLKTAI
AIGIKVSRKY

MS018761 (gene) of Bitter gourd (TR) v1 genome