; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS018768 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018768
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAP-5 complex subunit beta-1
Genome locationscaffold313:1813142..1813375
RNA-Seq ExpressionMS018768
SyntenyMS018768
Gene Ontology termsGO:0015031 - protein transport (biological process)
GO:0016197 - endosomal transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030119 - AP-type membrane coat adaptor complex (cellular component)
InterPro domainsIPR038741 - AP-5 complex subunit beta-1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067550.1 AP-5 complex subunit beta-1 [Cucumis melo var. makuwa]7.8e-3592.31Show/hide
Query:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
        LDRGPLRLTYFS EDE GS +SS+KRNMGHFHILIFLPPRFHLLFQ+EVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
Subjt:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
XP_008466491.1 PREDICTED: uncharacterized protein LOC103503880 [Cucumis melo]7.8e-3592.31Show/hide
Query:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
        LDRGPLRLTYFS EDE GS +SS+KRNMGHFHILIFLPPRFHLLFQ+EVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
Subjt:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
XP_011654553.1 uncharacterized protein LOC101219595 [Cucumis sativus]1.7e-3491.03Show/hide
Query:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
        LDRGPLRLTYFS EDE GS ++S+KRNMGHFHILIFLPPRFHLLFQ+EVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
Subjt:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
XP_022146370.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111015598, partial [Momordica charantia]2.0e-38100Show/hide
Query:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
        LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
Subjt:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
XP_038876028.1 uncharacterized protein LOC120068363 [Benincasa hispida]1.0e-3491.03Show/hide
Query:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
        LDRGPLRLTYFS EDE GS +SS+KRNMGHFHILIFLPPRFHLLFQ+EVSDFSTLVRIRTDHWPCLAY+DDYLEALFL
Subjt:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
TrEMBL top hitse value%identityAlignment
A0A0A0KJ67 AP-5 complex subunit beta-18.4e-3591.03Show/hide
Query:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
        LDRGPLRLTYFS EDE GS ++S+KRNMGHFHILIFLPPRFHLLFQ+EVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
Subjt:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
A0A1S3CRD3 AP-5 complex subunit beta-13.8e-3592.31Show/hide
Query:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
        LDRGPLRLTYFS EDE GS +SS+KRNMGHFHILIFLPPRFHLLFQ+EVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
Subjt:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
A0A5D3BDX5 AP-5 complex subunit beta-13.8e-3592.31Show/hide
Query:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
        LDRGPLRLTYFS EDE GS +SS+KRNMGHFHILIFLPPRFHLLFQ+EVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
Subjt:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
A0A6J1CX39 AP-5 complex subunit beta-19.6e-39100Show/hide
Query:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
        LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
Subjt:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
A0A6J1GY96 AP-5 complex subunit beta-11.9e-3492.31Show/hide
Query:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
        LDRGPLRLTYFS EDE GS ISS+KRNMGHFHILIFLPPRFHLLFQ+EVSD STLVRIRTDHWPCLAYVDDYLEALFL
Subjt:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
SwissProt top hitse value%identityAlignment
F6S215 AP-5 complex subunit beta-16.7e-0538.3Show/hide
Query:  NMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYL
        N G + I +FLPP+FH+L  ++  D +    +RTD+W  L Y++ +L
Subjt:  NMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYL
Arabidopsis top hitse value%identityAlignment
AT3G19870.1 unknown protein6.6e-2461.54Show/hide
Query:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL
        L+RGPLRLTY    D+   P++  +  MG   +L+FLPPR+HL+F++EV   STLV IRTD+WPCLAYVDDYLEALFL
Subjt:  LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTGATAGAGGCCCGCTACGTCTTACATATTTTTCAACCGAAGACGAAACGGGAAGTCCAATCAGTAGCCATAAGAGAAACATGGGTCACTTCCATATTTTGATATTTCT
TCCACCAAGGTTTCACCTTCTTTTCCAGGTGGAAGTTTCAGATTTTTCAACTTTAGTTCGAATTCGAACCGATCACTGGCCCTGCTTGGCTTACGTTGATGATTATTTGG
AGGCCCTGTTTCTT
mRNA sequenceShow/hide mRNA sequence
CTTGATAGAGGCCCGCTACGTCTTACATATTTTTCAACCGAAGACGAAACGGGAAGTCCAATCAGTAGCCATAAGAGAAACATGGGTCACTTCCATATTTTGATATTTCT
TCCACCAAGGTTTCACCTTCTTTTCCAGGTGGAAGTTTCAGATTTTTCAACTTTAGTTCGAATTCGAACCGATCACTGGCCCTGCTTGGCTTACGTTGATGATTATTTGG
AGGCCCTGTTTCTT
Protein sequenceShow/hide protein sequence
LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL