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MS018787 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018787
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold238:87620..87913
RNA-Seq ExpressionMS018787
SyntenyMS018787
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]3.7e-2656.04Show/hide
Query:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDCSS-RVDSMEKMKEY
        LGN++G  E+V+ +A++ CWG  LRV++++DV +P+ RGIK+NLDGP+GGCWIP+ YERLP+F YHCG L H+++DCS   VDS+ K  +Y
Subjt:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDCSS-RVDSMEKMKEY

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]6.4e-2650.53Show/hide
Query:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDCSSRVDSMEKMKEYVAPYG
        LGN++G   +VDC+     WG SLR+++  D+T+P+RRGIKIN+DGP+GGCWIP+ YERLP+FCY CG++GH   DC +R  + +      + YG
Subjt:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDCSSRVDSMEKMKEYVAPYG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]8.1e-2162.32Show/hide
Query:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGI
        LGN++G  EE DCD  +  WG +LRV++  D+++P+RRGIK+NLDGPIGG WIP+ YERLP+FCYHCG+
Subjt:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGI

XP_042952131.1 uncharacterized protein LOC122289219 [Carya illinoinensis]2.9e-1844.9Show/hide
Query:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDCSSRVDSMEKMKEYVAPYGARL
        +GN +G  EEVD +  +  WGE +R++++ D++QP+ RG+++ L G  G CWI   YERLPNFCY CG LGH  +DC   V   E       P+GA L
Subjt:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDCSSRVDSMEKMKEYVAPYGARL

XP_042958115.1 uncharacterized protein LOC122293643 [Carya illinoinensis]1.2e-1947.96Show/hide
Query:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDCSSRVDSMEKMKEYVAPYGARL
        +GNS+G  EE+D + D++ WGE ++++I  DVT+P+ RG  INL G  G CW+  TYERLP FCY CG LGH  +DCS   +     KE   P+G  L
Subjt:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDCSSRVDSMEKMKEYVAPYGARL

TrEMBL top hitse value%identityAlignment
A0A6J1BSZ1 uncharacterized protein LOC1110054811.8e-2656.04Show/hide
Query:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDCSS-RVDSMEKMKEY
        LGN++G  E+V+ +A++ CWG  LRV++++DV +P+ RGIK+NLDGP+GGCWIP+ YERLP+F YHCG L H+++DCS   VDS+ K  +Y
Subjt:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDCSS-RVDSMEKMKEY

A0A6J1DU55 uncharacterized protein LOC1110231353.1e-2650.53Show/hide
Query:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDCSSRVDSMEKMKEYVAPYG
        LGN++G   +VDC+     WG SLR+++  D+T+P+RRGIKIN+DGP+GGCWIP+ YERLP+FCY CG++GH   DC +R  + +      + YG
Subjt:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDCSSRVDSMEKMKEYVAPYG

A0A6J1DX30 uncharacterized protein LOC1110248743.9e-2162.32Show/hide
Query:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGI
        LGN++G  EE DCD  +  WG +LRV++  D+++P+RRGIK+NLDGPIGG WIP+ YERLP+FCYHCG+
Subjt:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGI

A0A6P9EFS2 uncharacterized protein LOC1183463047.6e-1744.9Show/hide
Query:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDCSSRVDSMEKMKEYVAPYGARL
        +G  +G+ EEVD    ++ WGE L+V+I  DV +P+ RG K  + G    CW+  +YERLPNFCY CG LGH  R+C  R  + E       PYGA L
Subjt:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDCSSRVDSMEKMKEYVAPYGARL

A0A6P9EID8 uncharacterized protein LOC1183488561.3e-1649.35Show/hide
Query:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDC
        +GN +G  EEVD +  ++ WGE LR++++ +++QP+ RGI + L G  G  WI   YERLPNFCY CG LGH  +DC
Subjt:  LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTAGGAAATTCAGTAGGCGAATGTGAGGAGGTAGATTGCGATGCTGATGATTTGTGTTGGGGTGAAAGTCTTAGAGTCAAAATCAAATACGATGTTACTCAACCAATTCG
TAGAGGGATCAAAATTAACTTAGATGGACCAATCGGAGGGTGCTGGATCCCGATGACCTATGAAAGACTGCCTAACTTCTGCTATCACTGTGGCATCTTGGGCCACTTGG
TGAGGGATTGTTCTTCAAGGGTTGATAGTATGGAAAAAATGAAAGAGTATGTGGCCCCGTATGGTGCTAGGCTC
mRNA sequenceShow/hide mRNA sequence
CTAGGAAATTCAGTAGGCGAATGTGAGGAGGTAGATTGCGATGCTGATGATTTGTGTTGGGGTGAAAGTCTTAGAGTCAAAATCAAATACGATGTTACTCAACCAATTCG
TAGAGGGATCAAAATTAACTTAGATGGACCAATCGGAGGGTGCTGGATCCCGATGACCTATGAAAGACTGCCTAACTTCTGCTATCACTGTGGCATCTTGGGCCACTTGG
TGAGGGATTGTTCTTCAAGGGTTGATAGTATGGAAAAAATGAAAGAGTATGTGGCCCCGTATGGTGCTAGGCTC
Protein sequenceShow/hide protein sequence
LGNSVGECEEVDCDADDLCWGESLRVKIKYDVTQPIRRGIKINLDGPIGGCWIPMTYERLPNFCYHCGILGHLVRDCSSRVDSMEKMKEYVAPYGARL