; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS018797 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018797
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPolynucleotidyl transferase, ribonuclease H-like superfamily protein
Genome locationscaffold238:272122..272730
RNA-Seq ExpressionMS018797
SyntenyMS018797
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]8.3e-2038.56Show/hide
Query:  AIWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAACNRSSTSLGAIVRDSNCFIRLASSTYL
        AIW DRNS   G    +   +C+WI +Y  N+  ++ + R  SP    +S    +  W PP  + +K+N DAAC  +ST LG I+RD    + +A S +L
Subjt:  AIWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAACNRSSTSLGAIVRDSNCFIRLASSTYL

Query:  LTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNEL
          P  PL AE++ +LE L+ A S  +T L VESD   +IRL+ G++ + G EL
Subjt:  LTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNEL

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.4e-3543.07Show/hide
Query:  IWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAACNRSSTSLGAIVRDSNCFIRLASSTYLL
        IWNDRNS++ GK    V  KC+W+  +L +   ++ S+  P   S+H     V   W P     LKLN DAAC  +STS G I+RDS+C +  A+S  + 
Subjt:  IWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAACNRSSTSLGAIVRDSNCFIRLASSTYLL

Query:  TPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQ-ATMCIWST
         P +PLLAE++ +LEGL+ A +  FTHL+VESDSL +I+LI  EI T G+E  W+++I+ L   F+ I+F+H  R  N+ AH LAK G+   +    W  
Subjt:  TPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQ-ATMCIWST

Query:  NF
        NF
Subjt:  NF

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]3.9e-1729.76Show/hide
Query:  AIWNDRNSVVQGKPTPSVIEKCDWIYTYLANFR---NSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAACNRSSTSLGAIVRDSNCFIRLASS
        A+WNDR++++  K  P  + K +WI  Y    R   ++    R P             + W PP    +K+N DAA +   + +G ++R+ N  I  A  
Subjt:  AIWNDRNSVVQGKPTPSVIEKCDWIYTYLANFR---NSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAACNRSSTSLGAIVRDSNCFIRLASS

Query:  TYLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQATMCI
         + +   TPLLA++ A+ EGL  A  +G   + VE+DSL ++ LI  +    G  + W+ DI+  A +F  I F HV R +N  A+ L +  +      +
Subjt:  TYLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQATMCI

Query:  WSTNF
        W  +F
Subjt:  WSTNF

XP_023897447.1 uncharacterized protein LOC112009345 [Quercus suber]1.6e-1531Show/hide
Query:  AIWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAAC--NRSSTSLGAIVRDSNCFIRLASST
        A W +RN +  G    S      W+  YL  +  +          S  A    V+ TW+PPP + LK+NVD A   N +   +GA+VRD    +  A S 
Subjt:  AIWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAAC--NRSSTSLGAIVRDSNCFIRLASST

Query:  YLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQATMCIW
         +  P  PL  E++A   GLQ A+ MG+ ++ +E DSL  +R + G   +       ++ ++    +F ++  +HV R  NKPAH+LAK  L      +W
Subjt:  YLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQATMCIW

XP_030479133.1 uncharacterized protein LOC115696372 [Cannabis sativa]1.1e-1631.16Show/hide
Query:  IWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAA--CNRSSTSLGAIVRDSNCFIRLASSTY
        IW+DRN+ + GK   + ++       Y+  +R+  S+    +P +S+ ++     +W PPP N  KLNVDAA   +RS   +G IVR+S   ++ A ST 
Subjt:  IWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAA--CNRSSTSLGAIVRDSNCFIRLASSTY

Query:  LLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQATMCIW
         +  F     E +A+  GL  A++       VE+D L  +  ++G++S +      + D+K    NFS+   +H+ R  N+ AH LA+  L     CIW
Subjt:  LLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQATMCIW

TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047864.0e-2038.56Show/hide
Query:  AIWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAACNRSSTSLGAIVRDSNCFIRLASSTYL
        AIW DRNS   G    +   +C+WI +Y  N+  ++ + R  SP    +S    +  W PP  + +K+N DAAC  +ST LG I+RD    + +A S +L
Subjt:  AIWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAACNRSSTSLGAIVRDSNCFIRLASSTYL

Query:  LTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNEL
          P  PL AE++ +LE L+ A S  +T L VESD   +IRL+ G++ + G EL
Subjt:  LTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNEL

A0A6J1DX30 uncharacterized protein LOC1110248741.2e-3543.07Show/hide
Query:  IWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAACNRSSTSLGAIVRDSNCFIRLASSTYLL
        IWNDRNS++ GK    V  KC+W+  +L +   ++ S+  P   S+H     V   W P     LKLN DAAC  +STS G I+RDS+C +  A+S  + 
Subjt:  IWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAACNRSSTSLGAIVRDSNCFIRLASSTYLL

Query:  TPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQ-ATMCIWST
         P +PLLAE++ +LEGL+ A +  FTHL+VESDSL +I+LI  EI T G+E  W+++I+ L   F+ I+F+H  R  N+ AH LAK G+   +    W  
Subjt:  TPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQ-ATMCIWST

Query:  NF
        NF
Subjt:  NF

A0A6J1DZK3 uncharacterized protein LOC1110249681.9e-1729.76Show/hide
Query:  AIWNDRNSVVQGKPTPSVIEKCDWIYTYLANFR---NSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAACNRSSTSLGAIVRDSNCFIRLASS
        A+WNDR++++  K  P  + K +WI  Y    R   ++    R P             + W PP    +K+N DAA +   + +G ++R+ N  I  A  
Subjt:  AIWNDRNSVVQGKPTPSVIEKCDWIYTYLANFR---NSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAACNRSSTSLGAIVRDSNCFIRLASS

Query:  TYLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQATMCI
         + +   TPLLA++ A+ EGL  A  +G   + VE+DSL ++ LI  +    G  + W+ DI+  A +F  I F HV R +N  A+ L +  +      +
Subjt:  TYLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQATMCI

Query:  WSTNF
        W  +F
Subjt:  WSTNF

A0A803NGI9 Uncharacterized protein2.2e-1836.95Show/hide
Query:  IWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHT-WSPPPINYLKLNVDAAC--NRSSTSLGAIVRDSNCFIRLASST
        +WNDRN+ + GKP  S  +       Y  NF+   +SS+     S   ST   A   W  PP++ LK+NVDAAC  +R+   +G I+R+S+  +  A S 
Subjt:  IWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHT-WSPPPINYLKLNVDAAC--NRSSTSLGAIVRDSNCFIRLASST

Query:  YLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSL---NSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQATM
         L     P   E +A+L G+  A     +    ESDSL   NSI  I   IS+FG+    +LDIKN     SS+  +HV R  N+ AH LAK+ L     
Subjt:  YLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSL---NSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQATM

Query:  CIW
        C+W
Subjt:  CIW

A0A803P3R1 Uncharacterized protein9.9e-1933.98Show/hide
Query:  IWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAACNRSST--SLGAIVRDSNCFIRLASSTY
        IW DRN+++ GK      E      TY+ NF+ +  +S+    FSS A+     H W  PP   +K+NVDAA + ++    LGAI+RDS   ++ A S  
Subjt:  IWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAACNRSST--SLGAIVRDSNCFIRLASSTY

Query:  LLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGW---LLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQATMC
        +L    P   E +A+  GLQ AQS+   H+Q++    + + L+ G  S     LG+   + D+KN    F ++  +HV R  N+ AH LAK  L+    C
Subjt:  LLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGW---LLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQATMC

Query:  IWSTNF
        +W  +F
Subjt:  IWSTNF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G47497.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.1e-0429.46Show/hide
Query:  GAIVRD-SNCFIRLASSTYLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNK
        G ++RD S  F+    +T   T    L +E QA+L  +Q   S G   +  E D+   + +++   S F +   W+ D++     F    F  + R  NK
Subjt:  GAIVRD-SNCFIRLASSTYLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNK

Query:  PAHMLAKNGLLQ
        PA +LAK+ L Q
Subjt:  PAHMLAKNGLLQ

AT1G47497.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.1e-0429.46Show/hide
Query:  GAIVRD-SNCFIRLASSTYLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNK
        G ++RD S  F+    +T   T    L +E QA+L  +Q   S G   +  E D+   + +++   S F +   W+ D++     F    F  + R  NK
Subjt:  GAIVRD-SNCFIRLASSTYLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNK

Query:  PAHMLAKNGLLQ
        PA +LAK+ L Q
Subjt:  PAHMLAKNGLLQ

AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.4e-1036.3Show/hide
Query:  WSPPPINYLKLNVDAACNRSSTSLGA--IVRDSNCFIRLASSTYLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGW
        W  PP  ++K N DA  N  +    A  I+R+ +   +   S  L    TPL AE +A+L  LQQ    G+  + +E D      L+ G  S+  N L  
Subjt:  WSPPPINYLKLNVDAACNRSSTSLGA--IVRDSNCFIRLASSTYLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGW

Query:  LL-DIKNLALNFSSITFNHVCRLNNKPAHMLAKNG
        LL DI+  A  FS++ F+ V R  NK AH LAK G
Subjt:  LL-DIKNLALNFSSITFNHVCRLNNKPAHMLAKNG

AT2G46460.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.8e-0831.39Show/hide
Query:  WSPPPINYLKLNVDAACNRSSTS-LGAIVRD-SNCFIRLASSTYLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGW
        W+ PP  + K N D + NR   S  G I+RD S  F+    +T   T    L +E QA+L  +Q   S G   +  E D+   + +++   S F +   W
Subjt:  WSPPPINYLKLNVDAACNRSSTS-LGAIVRD-SNCFIRLASSTYLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGW

Query:  LLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQ
        + D++     F    F  + R  NKPA +LAK+ L Q
Subjt:  LLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQ

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.2e-0931.69Show/hide
Query:  PPINYLKLNVDAACNRSSTSLGA--IVRDSNCFIRLASSTYLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLD
        P ++ + +  DAA    +  +G   ++R+      L   +       PL+AE  A+   LQ AQS+G T L + SDS   I  I  E S      G + D
Subjt:  PPINYLKLNVDAACNRSSTSLGA--IVRDSNCFIRLASSTYLLTPFTPLLAELQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLD

Query:  IKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQATMCIWST
        I NL+L F+ ++F+ V R  N+ A  LAK+ L+  ++   ST
Subjt:  IKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQATMCIWST


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCCATTTGGAATGATAGAAACAGTGTGGTTCAAGGGAAGCCAACACCATCAGTAATTGAAAAGTGTGATTGGATTTACACATACCTTGCCAATTTCAGGAATAGTAAAAG
CTCATCGCGTGGTCCTTCACCGTTTTCTTCTCATGCGTCGACGAATTTGGTTGCCCACACATGGAGTCCTCCACCGATTAATTATTTGAAGTTAAATGTAGATGCAGCTT
GTAATCGCTCATCTACAAGCTTGGGAGCCATTGTTCGAGACTCAAACTGCTTTATTCGACTGGCTTCTTCGACATACCTTCTCACTCCATTCACACCTCTGCTTGCTGAG
CTTCAGGCAGTTCTTGAAGGTTTGCAACAAGCTCAATCCATGGGATTCACTCACCTCCAGGTTGAATCAGACTCTCTCAACTCGATTAGACTCATTCATGGAGAGATCTC
AACTTTTGGGAATGAACTTGGTTGGTTGTTGGATATAAAGAATTTAGCCCTAAATTTCTCCTCCATTACCTTCAACCATGTCTGTCGATTGAATAATAAACCAGCACACA
TGTTAGCCAAGAATGGCCTCCTTCAGGCAACCATGTGTATATGGTCCACTAATTTTTTC
mRNA sequenceShow/hide mRNA sequence
GCCATTTGGAATGATAGAAACAGTGTGGTTCAAGGGAAGCCAACACCATCAGTAATTGAAAAGTGTGATTGGATTTACACATACCTTGCCAATTTCAGGAATAGTAAAAG
CTCATCGCGTGGTCCTTCACCGTTTTCTTCTCATGCGTCGACGAATTTGGTTGCCCACACATGGAGTCCTCCACCGATTAATTATTTGAAGTTAAATGTAGATGCAGCTT
GTAATCGCTCATCTACAAGCTTGGGAGCCATTGTTCGAGACTCAAACTGCTTTATTCGACTGGCTTCTTCGACATACCTTCTCACTCCATTCACACCTCTGCTTGCTGAG
CTTCAGGCAGTTCTTGAAGGTTTGCAACAAGCTCAATCCATGGGATTCACTCACCTCCAGGTTGAATCAGACTCTCTCAACTCGATTAGACTCATTCATGGAGAGATCTC
AACTTTTGGGAATGAACTTGGTTGGTTGTTGGATATAAAGAATTTAGCCCTAAATTTCTCCTCCATTACCTTCAACCATGTCTGTCGATTGAATAATAAACCAGCACACA
TGTTAGCCAAGAATGGCCTCCTTCAGGCAACCATGTGTATATGGTCCACTAATTTTTTC
Protein sequenceShow/hide protein sequence
AIWNDRNSVVQGKPTPSVIEKCDWIYTYLANFRNSKSSSRGPSPFSSHASTNLVAHTWSPPPINYLKLNVDAACNRSSTSLGAIVRDSNCFIRLASSTYLLTPFTPLLAE
LQAVLEGLQQAQSMGFTHLQVESDSLNSIRLIHGEISTFGNELGWLLDIKNLALNFSSITFNHVCRLNNKPAHMLAKNGLLQATMCIWSTNFF