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MS018831 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018831
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description16.9 kDa class I heat shock protein 3
Genome locationscaffold14:180303..180911
RNA-Seq ExpressionMS018831
SyntenyMS018831
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsIPR002068 - Alpha crystallin/Hsp20 domain
IPR008978 - HSP20-like chaperone
IPR045045 - Small heat shock protein RTM2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008465577.1 PREDICTED: 16.9 kDa class I heat shock protein 1 [Cucumis melo]2.0e-4869.14Show/hide
Query:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKAS-AGVGK
        GV YE+FEPFC+WK+L+DSDVLEVHLPEFKKEELRVRI NN++LT+SGE L A D KK+ FNRE KL KDIYPD+IRAKFG +VLSITMPKKAS   + K
Subjt:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKAS-AGVGK

Query:  PEAGVSNSEGKRTADSDNDKPKNFIS---SRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN
        P    + SE K T  + N KPKNFIS   S  SRLK SK+TA AMAVA VILA+G YYL KN
Subjt:  PEAGVSNSEGKRTADSDNDKPKNFIS---SRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN

XP_022137119.1 16.9 kDa class I heat shock protein 3 [Momordica charantia]3.4e-8099.38Show/hide
Query:  MAKDGVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKASAG
        MAKDGVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKAND KKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKASAG
Subjt:  MAKDGVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKASAG

Query:  VGKPEAGVSNSEGKRTADSDNDKPKNFISSRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN
        VGKPEAGVSNSEGKRTADSDNDKPKNFISSRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN
Subjt:  VGKPEAGVSNSEGKRTADSDNDKPKNFISSRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN

XP_022923784.1 17.8 kDa class I heat shock protein-like [Cucurbita moschata]1.1e-4669.33Show/hide
Query:  VTYEDFEPFCQWKRLDDSD--VLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK-ASAGVG
        V+YE+FEPFC+WK+LDDSD  VLEVHLPEFKKEELRVRI NN++L +SGE L AND KK++FNRE KL KDIYPDQIRAKFG SVLSITMPKK +SA   
Subjt:  VTYEDFEPFCQWKRLDDSD--VLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK-ASAGVG

Query:  KPEAGVSNSEGKRTADSDNDKPKNFIS---SRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN
        KP+A  + SEG  TA +D+ KPKN IS   S  SRLK SK+ A A+A A VILA GAYYL KN
Subjt:  KPEAGVSNSEGKRTADSDNDKPKNFIS---SRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN

XP_023001660.1 17.8 kDa class I heat shock protein-like [Cucurbita maxima]2.0e-4868.71Show/hide
Query:  VTYEDFEPFCQWKRLDDSD--VLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK-ASAGVG
        V+YE+FEPFC+WK+LDDSD  VLEVHLPEFKKEELRVRI NN++L +SGE L AND KK++FNRE KL KDIYPDQIRAKFG SVLSITMPKK +SA +G
Subjt:  VTYEDFEPFCQWKRLDDSD--VLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK-ASAGVG

Query:  KPEAGVSNSEGKRTADSDNDKPKNFIS---SRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN
        KP+A  + SEG  TA +D+ +PKN IS   S  SRLK SK+ A A+A A +ILA GAYYL KN
Subjt:  KPEAGVSNSEGKRTADSDNDKPKNFIS---SRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN

XP_023520341.1 17.8 kDa class I heat shock protein-like [Cucurbita pepo subsp. pepo]5.9e-4869.94Show/hide
Query:  VTYEDFEPFCQWKRLDDSD--VLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK-ASAGVG
        V+YE+FEPFC+WK+LDDSD  VLEVHLPEFKKEELRVRI NN++L +SGE L AND KK++FNRE KL KDIYPDQIRAKFG SVLSITMPKK +SA +G
Subjt:  VTYEDFEPFCQWKRLDDSD--VLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK-ASAGVG

Query:  KPEAGVSNSEGKRTADSDNDKPKNFIS---SRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN
        KP+A  + SEG  TA +D+ KPKN IS   S  SRLK SK+ A A+A A VILA GAYYL KN
Subjt:  KPEAGVSNSEGKRTADSDNDKPKNFIS---SRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN

TrEMBL top hitse value%identityAlignment
A0A1S3CP71 16.9 kDa class I heat shock protein 19.8e-4969.14Show/hide
Query:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKAS-AGVGK
        GV YE+FEPFC+WK+L+DSDVLEVHLPEFKKEELRVRI NN++LT+SGE L A D KK+ FNRE KL KDIYPD+IRAKFG +VLSITMPKKAS   + K
Subjt:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKAS-AGVGK

Query:  PEAGVSNSEGKRTADSDNDKPKNFIS---SRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN
        P    + SE K T  + N KPKNFIS   S  SRLK SK+TA AMAVA VILA+G YYL KN
Subjt:  PEAGVSNSEGKRTADSDNDKPKNFIS---SRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN

A0A5D3BHU7 16.9 kDa class I heat shock protein 19.8e-4969.14Show/hide
Query:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKAS-AGVGK
        GV YE+FEPFC+WK+L+DSDVLEVHLPEFKKEELRVRI NN++LT+SGE L A D KK+ FNRE KL KDIYPD+IRAKFG +VLSITMPKKAS   + K
Subjt:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKAS-AGVGK

Query:  PEAGVSNSEGKRTADSDNDKPKNFIS---SRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN
        P    + SE K T  + N KPKNFIS   S  SRLK SK+TA AMAVA VILA+G YYL KN
Subjt:  PEAGVSNSEGKRTADSDNDKPKNFIS---SRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN

A0A6J1C6B8 16.9 kDa class I heat shock protein 31.6e-8099.38Show/hide
Query:  MAKDGVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKASAG
        MAKDGVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKAND KKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKASAG
Subjt:  MAKDGVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKASAG

Query:  VGKPEAGVSNSEGKRTADSDNDKPKNFISSRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN
        VGKPEAGVSNSEGKRTADSDNDKPKNFISSRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN
Subjt:  VGKPEAGVSNSEGKRTADSDNDKPKNFISSRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN

A0A6J1E7D1 17.8 kDa class I heat shock protein-like5.4e-4769.33Show/hide
Query:  VTYEDFEPFCQWKRLDDSD--VLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK-ASAGVG
        V+YE+FEPFC+WK+LDDSD  VLEVHLPEFKKEELRVRI NN++L +SGE L AND KK++FNRE KL KDIYPDQIRAKFG SVLSITMPKK +SA   
Subjt:  VTYEDFEPFCQWKRLDDSD--VLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK-ASAGVG

Query:  KPEAGVSNSEGKRTADSDNDKPKNFIS---SRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN
        KP+A  + SEG  TA +D+ KPKN IS   S  SRLK SK+ A A+A A VILA GAYYL KN
Subjt:  KPEAGVSNSEGKRTADSDNDKPKNFIS---SRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN

A0A6J1KLT1 17.8 kDa class I heat shock protein-like9.8e-4968.71Show/hide
Query:  VTYEDFEPFCQWKRLDDSD--VLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK-ASAGVG
        V+YE+FEPFC+WK+LDDSD  VLEVHLPEFKKEELRVRI NN++L +SGE L AND KK++FNRE KL KDIYPDQIRAKFG SVLSITMPKK +SA +G
Subjt:  VTYEDFEPFCQWKRLDDSD--VLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK-ASAGVG

Query:  KPEAGVSNSEGKRTADSDNDKPKNFIS---SRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN
        KP+A  + SEG  TA +D+ +PKN IS   S  SRLK SK+ A A+A A +ILA GAYYL KN
Subjt:  KPEAGVSNSEGKRTADSDNDKPKNFIS---SRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN

SwissProt top hitse value%identityAlignment
D5K211 Inactive protein RESTRICTED TEV MOVEMENT 21.5e-0937.63Show/hide
Query:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVR-ISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK
        GV YEDF P  +WK   ++ +L + L  F KE+++V  + ++ ++ V+GER  AN  K  +FN  F + ++   D+I   F ++VL+ITMPK+
Subjt:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVR-ISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK

D9UBX4 Inactive protein RESTRICTED TEV MOVEMENT 21.1e-0937.63Show/hide
Query:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVR-ISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK
        GV YEDF P  +WK   ++ +L + L  F KE+++V  + ++ ++ V+GER  AN  K  +FN  F + ++   D+I   F ++VL+ITMPK+
Subjt:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVR-ISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK

D9UBX6 Inactive protein RESTRICTED TEV MOVEMENT 21.1e-0937.63Show/hide
Query:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVR-ISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK
        GV YEDF P  +WK   ++ +L + L  F KE+++V  + ++ ++ V+GER  AN  K  +FN  F + ++   D+I   F ++VL+ITMPK+
Subjt:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVR-ISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK

D9UC01 Inactive protein RESTRICTED TEV MOVEMENT 21.9e-0937.63Show/hide
Query:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVR-ISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK
        GV YEDF P  +WK   ++ +L + L  F KE+++V  + ++ ++ V+GER  AN  K  +FN  F + ++   D+I   F  +VL+ITMPK+
Subjt:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVR-ISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK

Q9M670 Protein RESTRICTED TEV MOVEMENT 21.1e-0937.63Show/hide
Query:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVR-ISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK
        GV YEDF P  +WK   ++ +L + L  F KE+++V  + ++ ++ V+GER  AN  K  +FN  F + ++   D+I   F ++VL+ITMPK+
Subjt:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVR-ISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK

Arabidopsis top hitse value%identityAlignment
AT1G07400.1 HSP20-like chaperones superfamily protein3.4e-0933.33Show/hide
Query:  WKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKI----------KFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKASA
        WK   ++ V +  LP  KKEE++V I ++++L +SGER    + K+           +F+R+FKL +++  DQ++A   + VL++T+PK   A
Subjt:  WKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKI----------KFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKASA

AT1G54400.1 HSP20-like chaperones superfamily protein5.7e-1734.76Show/hide
Query:  YEDFEPFCQWKRLDDSDVLEVHLPE-FKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPK--KASAGVGKP
        Y++ EPFC+W+R +D D+LE+HLP   KKE L+++I+N+ +LT++G     + +K I+F +E K++KD   ++IRAKF   VL +TMPK    +AG+   
Subjt:  YEDFEPFCQWKRLDDSDVLEVHLPE-FKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPK--KASAGVGKP

Query:  EAGVSNSEGKRTADSDNDKPKNFISSRFSRLKLSKQ----------TAAAMAVAAVILALGAYY
          G +        D       N  S  +S+    KQ           AA + VAA +L +   Y
Subjt:  EAGVSNSEGKRTADSDNDKPKNFISSRFSRLKLSKQ----------TAAAMAVAAVILALGAYY

AT2G27140.1 HSP20-like chaperones superfamily protein1.4e-1034.41Show/hide
Query:  YEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKASAG
        Y++FEP   WK     + L ++LP F+KE+L+V+++    L V G+R  A  +K I+F +EF +  +I  D + AKF  + L + +P+    G
Subjt:  YEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKASAG

AT5G04890.1 HSP20-like chaperones superfamily protein8.0e-1137.63Show/hide
Query:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVR-ISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK
        GV YEDF P  +WK   ++ +L + L  F KE+++V  + ++ ++ V+GER  AN  K  +FN  F + ++   D+I   F ++VL+ITMPK+
Subjt:  GVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVR-ISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKK

AT5G20970.1 HSP20-like chaperones superfamily protein9.8e-0935.05Show/hide
Query:  MAKDGV--TYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPK
        MA  G+   Y++FEP  +W    D++VL   LP FKKE+L+V ++    L ++GER     +K I+F++E  +   +  D + A F  + L I  PK
Subjt:  MAKDGV--TYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTACCAACAATGGCAAAAGATGGAGTGACGTACGAGGACTTCGAACCTTTCTGCCAATGGAAAAGACTCGATGACTCTGACGTTCTTGAGGTTCATCTCCCAGAATTCAA
GAAGGAAGAATTGAGGGTTCGGATCAGTAACAATGCTCTCCTTACAGTTTCCGGCGAGCGCCTAAAAGCCAATGATTCGAAGAAGATCAAATTCAACAGAGAATTCAAAC
TATCAAAGGATATATACCCAGACCAAATCCGTGCCAAATTCGGTAGCAGTGTTCTTTCGATCACGATGCCTAAGAAAGCATCAGCGGGTGTCGGCAAACCAGAAGCGGGC
GTATCCAACTCCGAGGGTAAACGAACAGCAGACAGTGATAATGATAAGCCAAAGAACTTCATATCAAGTCGATTCTCGAGGTTGAAATTGAGCAAGCAGACGGCCGCGGC
CATGGCGGTTGCAGCGGTGATTCTGGCATTGGGAGCTTACTATTTAACAAAAAAC
mRNA sequenceShow/hide mRNA sequence
TTACCAACAATGGCAAAAGATGGAGTGACGTACGAGGACTTCGAACCTTTCTGCCAATGGAAAAGACTCGATGACTCTGACGTTCTTGAGGTTCATCTCCCAGAATTCAA
GAAGGAAGAATTGAGGGTTCGGATCAGTAACAATGCTCTCCTTACAGTTTCCGGCGAGCGCCTAAAAGCCAATGATTCGAAGAAGATCAAATTCAACAGAGAATTCAAAC
TATCAAAGGATATATACCCAGACCAAATCCGTGCCAAATTCGGTAGCAGTGTTCTTTCGATCACGATGCCTAAGAAAGCATCAGCGGGTGTCGGCAAACCAGAAGCGGGC
GTATCCAACTCCGAGGGTAAACGAACAGCAGACAGTGATAATGATAAGCCAAAGAACTTCATATCAAGTCGATTCTCGAGGTTGAAATTGAGCAAGCAGACGGCCGCGGC
CATGGCGGTTGCAGCGGTGATTCTGGCATTGGGAGCTTACTATTTAACAAAAAAC
Protein sequenceShow/hide protein sequence
LPTMAKDGVTYEDFEPFCQWKRLDDSDVLEVHLPEFKKEELRVRISNNALLTVSGERLKANDSKKIKFNREFKLSKDIYPDQIRAKFGSSVLSITMPKKASAGVGKPEAG
VSNSEGKRTADSDNDKPKNFISSRFSRLKLSKQTAAAMAVAAVILALGAYYLTKN