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MS018856 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018856
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionhomeobox protein knotted-1-like 1
Genome locationscaffold14:464294..464458
RNA-Seq ExpressionMS018856
SyntenyMS018856
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR005540 - KNOX1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596993.1 Homeobox protein knotted-1-like 2, partial [Cucurbita argyrosperma subsp. sororia]2.4e-0662.75Show/hide
Query:  SNSTEEEQKV---LQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV
        ++ST++  +V   L+ EEE +G +G+ LRRRISSHPLYGLL+ETHLNCLKV
Subjt:  SNSTEEEQKV---LQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV

KAG7028461.1 Homeobox protein knotted-1-like 2 [Cucurbita argyrosperma subsp. argyrosperma]6.4e-0764.71Show/hide
Query:  SNSTEEEQKV---LQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV
        ++ST++  +V   L+ EEE +G +GE+LRRRISSHPLYGLL+ETHLNCLKV
Subjt:  SNSTEEEQKV---LQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV

XP_022137557.1 protein KNATM [Momordica charantia]1.2e-1898.11Show/hide
Query:  MESDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV
        MESDLSNSTE EQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV
Subjt:  MESDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV

XP_022945492.1 homeobox protein KNOX3 [Cucurbita moschata]2.4e-0662.75Show/hide
Query:  SNSTEEEQKV---LQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV
        ++ST++  +V   L+ EEE +G +G+ LRRRISSHPLYGLL+ETHLNCLKV
Subjt:  SNSTEEEQKV---LQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV

XP_038896017.1 homeobox protein knotted-1-like 2 [Benincasa hispida]4.9e-0765.52Show/hide
Query:  MESDLSNSTEEEQ----KVLQDEEEKE-GWEGEILRRRISSHPLYGLLVETHLNCLKV
        MES+ +  TEE Q    K L+DE E+E GWEGE+LR +IS+HPLY LLVETHLNCLKV
Subjt:  MESDLSNSTEEEQ----KVLQDEEEKE-GWEGEILRRRISSHPLYGLLVETHLNCLKV

TrEMBL top hitse value%identityAlignment
A0A6A4N7Y1 Uncharacterized protein1.3e-0568.18Show/hide
Query:  EEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV
        EEE++ L+ E+E+E    +IL+RRISSHPLYGLLVETHL CLKV
Subjt:  EEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV

A0A6J1C8K6 protein KNATM6.0e-1998.11Show/hide
Query:  MESDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV
        MESDLSNSTE EQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV
Subjt:  MESDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV

A0A6J1G133 homeobox protein KNOX31.2e-0662.75Show/hide
Query:  SNSTEEEQKV---LQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV
        ++ST++  +V   L+ EEE +G +G+ LRRRISSHPLYGLL+ETHLNCLKV
Subjt:  SNSTEEEQKV---LQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV

A0A6J1IFV6 homeobox protein KNOX3-like5.8e-0660.78Show/hide
Query:  DLSNSTEEEQKVLQDEEEKEGWE-GEILRRRISSHPLYGLLVETHLNCLKV
        D  N + ++   L+ EEE +G + GE+LRRRISSHPLYGLL++THLNCLKV
Subjt:  DLSNSTEEEQKVLQDEEEKEGWE-GEILRRRISSHPLYGLLVETHLNCLKV

V7C3D2 Uncharacterized protein1.5e-0662.5Show/hide
Query:  MESDLSNSTEEEQKVLQ---DEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV
        MES+  N+T E  K LQ   D++E+E    EIL+RRISSHPLYGLLVE HL+CLKV
Subjt:  MESDLSNSTEEEQKVLQ---DEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV

SwissProt top hitse value%identityAlignment
F4HXU3 Protein KNATM9.5e-0654.9Show/hide
Query:  SDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV
        S L N  +E    L++E ++   E EIL++RISSHPLYGLL+ +HLNCLKV
Subjt:  SDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV

Arabidopsis top hitse value%identityAlignment
AT1G14760.1 KNOX Arabidopsis thaliana meinox6.8e-0754.9Show/hide
Query:  SDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV
        S L N  +E    L++E ++   E EIL++RISSHPLYGLL+ +HLNCLKV
Subjt:  SDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV

AT1G14760.2 KNOX Arabidopsis thaliana meinox6.8e-0754.9Show/hide
Query:  SDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV
        S L N  +E    L++E ++   E EIL++RISSHPLYGLL+ +HLNCLKV
Subjt:  SDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV

AT1G14760.3 KNOX Arabidopsis thaliana meinox2.0e-0654Show/hide
Query:  SDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLK
        S L N  +E    L++E ++   E EIL++RISSHPLYGLL+ +HLNCLK
Subjt:  SDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTCAAATGGAGTCTGATCTGAGCAATTCTACAGAAGAAGAACAAAAAGTGCTACAAGATGAAGAGGAAAAAGAAGGCTGGGAAGGGGAAATTCTGCGGAGGAGAATTTC
CAGCCACCCTTTATACGGGCTATTAGTTGAAACTCACCTCAACTGTTTGAAGGTG
mRNA sequenceShow/hide mRNA sequence
GCTCAAATGGAGTCTGATCTGAGCAATTCTACAGAAGAAGAACAAAAAGTGCTACAAGATGAAGAGGAAAAAGAAGGCTGGGAAGGGGAAATTCTGCGGAGGAGAATTTC
CAGCCACCCTTTATACGGGCTATTAGTTGAAACTCACCTCAACTGTTTGAAGGTG
Protein sequenceShow/hide protein sequence
AQMESDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV