; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS018886 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018886
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationscaffold89:208821..210131
RNA-Seq ExpressionMS018886
SyntenyMS018886
Gene Ontology termsGO:0009416 - response to light stimulus (biological process)
GO:0009768 - photosynthesis, light harvesting in photosystem I (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001344 - Chlorophyll A-B binding protein, plant and chromista
IPR022796 - Chlorophyll A-B binding protein
IPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150882.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus]6.3e-11679.04Show/hide
Query:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRT-IVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKW
        MAV S SAAT  A+ + P SSS          ++P F P +     S SRRT ++A AQ++ R+TWLPGLDPPPHLDG+LAGDFGFDPLGL EDP+SLKW
Subjt:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRT-IVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKW

Query:  YVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGG
        YVQAEL+H RFAMLG+SG+LLTDLLRVTG+S++PVWY AGA EYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAA +GLEPGYPGG
Subjt:  YVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGG

Query:  PLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP
        PLLNPLG+AKDIKNAHDWKLKEIKNGRLAMVAM+GIFVQAYVTH GPIDNLVEHLSNPWHKTIIQTLSSSSP
Subjt:  PLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP

XP_022144175.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic isoform X1 [Momordica charantia]2.2e-14897.47Show/hide
Query:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERP--HSHSHSRRTIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK
        MAVSSLSAATPLAVQVRPCSSSWS SAISNTFFSPSFTPRERP  HSHSHSRRTIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK
Subjt:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERP--HSHSHSRRTIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK

Query:  WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMG----FVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEP
        WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMG    FVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEP
Subjt:  WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMG----FVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEP

Query:  GYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP
        GYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP
Subjt:  GYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP

XP_022144176.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic isoform X2 [Momordica charantia]3.9e-15098.9Show/hide
Query:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERP--HSHSHSRRTIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK
        MAVSSLSAATPLAVQVRPCSSSWS SAISNTFFSPSFTPRERP  HSHSHSRRTIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK
Subjt:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERP--HSHSHSRRTIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK

Query:  WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPG
        WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPG
Subjt:  WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPG

Query:  GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP
        GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP
Subjt:  GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP

XP_023001834.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima]3.5e-11478.39Show/hide
Query:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRTIVARA--QAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK
        MAV SLSAATP             H   S++ +S S + ++     S SRRT+ A+A  Q+QPR+TWLPGLDPPPHLDG+LAGDFGFDPLGL EDP SLK
Subjt:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRTIVARA--QAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK

Query:  WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPG
        W+VQAEL+HSRFAMLG+SGILLTDLLRVTG+S++PVWY AGA EYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE+A EGLEPGYPG
Subjt:  WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPG

Query:  GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP
        GPLLNPLGLAKDIKNAH+WKLKEIKNGRLAMVAM+GIFVQAYVT  GPIDNLVEHLSNPWH TII TLSSSSP
Subjt:  GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP

XP_038886221.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispida]1.3e-11679.63Show/hide
Query:  MAVS-SLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRT-IVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK
        MAVS S + A   A  ++P SSS S        ++PSF P +     S SRRT ++A+AQ++ R+TWLPGLDPPPHLDG+LAGDFGFDPLGL EDP SLK
Subjt:  MAVS-SLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRT-IVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK

Query:  WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPG
        WYVQAEL+HSRFAMLG+SGILLTDLLRVTG+S++PVWY AGA EYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAA EGLEPGYPG
Subjt:  WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPG

Query:  GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSS
        GPLLNPLG+AKDIKNAH+WKLKEIKNGRLAMVAM+GIFVQAYVTH GPIDNLVEHLSNPWHKTIIQTLSS
Subjt:  GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSS

TrEMBL top hitse value%identityAlignment
A0A0A0LRB4 Chlorophyll a-b binding protein, chloroplastic3.1e-11679.04Show/hide
Query:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRT-IVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKW
        MAV S SAAT  A+ + P SSS          ++P F P +     S SRRT ++A AQ++ R+TWLPGLDPPPHLDG+LAGDFGFDPLGL EDP+SLKW
Subjt:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRT-IVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKW

Query:  YVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGG
        YVQAEL+H RFAMLG+SG+LLTDLLRVTG+S++PVWY AGA EYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAA +GLEPGYPGG
Subjt:  YVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGG

Query:  PLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP
        PLLNPLG+AKDIKNAHDWKLKEIKNGRLAMVAM+GIFVQAYVTH GPIDNLVEHLSNPWHKTIIQTLSSSSP
Subjt:  PLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP

A0A6J1CQX2 Chlorophyll a-b binding protein, chloroplastic1.0e-14897.47Show/hide
Query:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERP--HSHSHSRRTIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK
        MAVSSLSAATPLAVQVRPCSSSWS SAISNTFFSPSFTPRERP  HSHSHSRRTIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK
Subjt:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERP--HSHSHSRRTIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK

Query:  WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMG----FVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEP
        WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMG    FVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEP
Subjt:  WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMG----FVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEP

Query:  GYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP
        GYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP
Subjt:  GYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP

A0A6J1CSJ3 Chlorophyll a-b binding protein, chloroplastic1.9e-15098.9Show/hide
Query:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERP--HSHSHSRRTIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK
        MAVSSLSAATPLAVQVRPCSSSWS SAISNTFFSPSFTPRERP  HSHSHSRRTIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK
Subjt:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERP--HSHSHSRRTIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK

Query:  WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPG
        WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPG
Subjt:  WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPG

Query:  GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP
        GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP
Subjt:  GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP

A0A6J1GH16 Chlorophyll a-b binding protein, chloroplastic8.3e-11478.52Show/hide
Query:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRTIVARA--QAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK
        MAV SLSAAT              H   S++F+S S +P++     S SRRT+ A+A  Q+QPR+TWLPGLDPPPHLDG+LAGDFGFDPLGL EDP SLK
Subjt:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRTIVARA--QAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK

Query:  WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPG
        W+VQAEL+HSRFAMLG+SGILLTDLLRVTG+S++PVWY AGA EYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE+A EGLEPGYPG
Subjt:  WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPG

Query:  GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSS
        GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAM+GIFVQAYVT  GPIDNLVEHLSNPWH T+I TLSS
Subjt:  GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSS

A0A6J1KNS0 Chlorophyll a-b binding protein, chloroplastic1.7e-11478.39Show/hide
Query:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRTIVARA--QAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK
        MAV SLSAATP             H   S++ +S S + ++     S SRRT+ A+A  Q+QPR+TWLPGLDPPPHLDG+LAGDFGFDPLGL EDP SLK
Subjt:  MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRTIVARA--QAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLK

Query:  WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPG
        W+VQAEL+HSRFAMLG+SGILLTDLLRVTG+S++PVWY AGA EYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE+A EGLEPGYPG
Subjt:  WYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPG

Query:  GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP
        GPLLNPLGLAKDIKNAH+WKLKEIKNGRLAMVAM+GIFVQAYVT  GPIDNLVEHLSNPWH TII TLSSSSP
Subjt:  GPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP

SwissProt top hitse value%identityAlignment
P13869 Chlorophyll a-b binding protein, chloroplastic3.7e-5048.42Show/hide
Query:  SRRTIVARAQAQP-RRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFAN
        SR   V+   A P R  W PG  PP  LDGSL GDFGFDPLGL  DPESLKW  QAEL+HSR+AMLG +GI + + L   GV   P WYTAG  EY F +
Subjt:  SRRTIVARAQAQP-RRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFAN

Query:  KETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGP
          TLF+++L+L+G+ E +R+ D   PG    +  F      L G + GYPGG   +PLG          + + KEIKNGRLAM+A++G + Q   T  GP
Subjt:  KETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGP

Query:  IDNLVEHLSNPWHKTIIQTLS
        IDNL  HL++P H TI    S
Subjt:  IDNLVEHLSNPWHKTIIQTLS

P27521 Chlorophyll a-b binding protein 4, chloroplastic1.6e-5351.72Show/hide
Query:  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVET
        WLPGL  P +L GSLAGD GFDPLGLAEDPE+LKW+VQAEL++ R+AMLG++G+LL ++    G+  VP WY AG  +Y FA+  TLF+++ +L  +VE 
Subjt:  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVET

Query:  KRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQ
        +R+ D K+PGS  Q+  F   + +L   E GYPGG + NPL  A       + K KE+ NGRLAM+A +G  VQ  VT  GP +NL++HLS+PWH TI+Q
Subjt:  KRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQ

Query:  TLS
        T +
Subjt:  TLS

Q9C639 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic1.1e-9979.81Show/hide
Query:  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLL
        A  R TWLPGL+PPP+LDG+LAGD+GFDPLGL EDPESLKWYVQAEL+HSRFAMLG++GIL TDLLR TG+  +PVWY AGA ++ FA+ +TL +VQ LL
Subjt:  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLL

Query:  MGFVETKRYMDFKSPGSQAQEGT-FFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNP
        MGF ETKRYMDF SPGSQA+EG+ FFGLEAALEGLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AM+G FVQA VTH GPIDNLVEHLSNP
Subjt:  MGFVETKRYMDFKSPGSQAQEGT-FFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNP

Query:  WHKTIIQTLSSSS
        WHKTIIQTL +S+
Subjt:  WHKTIIQTLSSSS

Q9SQL2 Chlorophyll a-b binding protein P4, chloroplastic4.2e-5451.22Show/hide
Query:  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVET
        WLPGL  P +L GSL GD GFDPLGLAEDPE+L+W+VQAEL++ R+AMLG++G+LL ++    G+  VP WY AG  EY FA+  TLF+++ +L  +VE 
Subjt:  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVET

Query:  KRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQ
        +R+ D K+PGS  Q+  F   + +L   E GYPGG + NPL  A  +    + K KEI NGRLAM+A +G  +Q  VT  GP DNL++H+S+PWH TI+Q
Subjt:  KRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQ

Query:  TLSSS
        TL  +
Subjt:  TLSSS

Q9SYW8 Photosystem I chlorophyll a/b-binding protein 2, chloroplastic6.3e-5048.58Show/hide
Query:  TIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETL
        ++ A A    R  W PG  PP  LDGSL GDFGFDPLGL+ DP+SLKW VQAE++H R+AMLG +GI + + L   G+   P WYTAG  EY F +K TL
Subjt:  TIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETL

Query:  FIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNL
        F+V+L+L+G+ E +R+ D   PGS   +  F      L G + GYPGG   +PLG          + + KEIKNGRLAM+A++G + Q   T  GPIDNL
Subjt:  FIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNL

Query:  VEHLSNPWHKTI
          HL++P H TI
Subjt:  VEHLSNPWHKTI

Arabidopsis top hitse value%identityAlignment
AT1G45474.1 photosystem I light harvesting complex gene 58.0e-10179.81Show/hide
Query:  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLL
        A  R TWLPGL+PPP+LDG+LAGD+GFDPLGL EDPESLKWYVQAEL+HSRFAMLG++GIL TDLLR TG+  +PVWY AGA ++ FA+ +TL +VQ LL
Subjt:  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLL

Query:  MGFVETKRYMDFKSPGSQAQEGT-FFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNP
        MGF ETKRYMDF SPGSQA+EG+ FFGLEAALEGLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AM+G FVQA VTH GPIDNLVEHLSNP
Subjt:  MGFVETKRYMDFKSPGSQAQEGT-FFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNP

Query:  WHKTIIQTLSSSS
        WHKTIIQTL +S+
Subjt:  WHKTIIQTLSSSS

AT1G45474.2 photosystem I light harvesting complex gene 58.0e-10179.81Show/hide
Query:  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLL
        A  R TWLPGL+PPP+LDG+LAGD+GFDPLGL EDPESLKWYVQAEL+HSRFAMLG++GIL TDLLR TG+  +PVWY AGA ++ FA+ +TL +VQ LL
Subjt:  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLL

Query:  MGFVETKRYMDFKSPGSQAQEGT-FFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNP
        MGF ETKRYMDF SPGSQA+EG+ FFGLEAALEGLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AM+G FVQA VTH GPIDNLVEHLSNP
Subjt:  MGFVETKRYMDFKSPGSQAQEGT-FFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNP

Query:  WHKTIIQTLSSSS
        WHKTIIQTL +S+
Subjt:  WHKTIIQTLSSSS

AT1G61520.1 photosystem I light harvesting complex gene 35.3e-4440.16Show/hide
Query:  SHSHSRRTIVARAQAQP-------RRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESL------KWYVQAELLHSRFAMLGISGILLTDLLRVTGVSK
        S S  + + V +A A P       R  W        +LDGSL GD+GFDPLGL+ DPE        +W    E+++ RFAMLG +G +  ++L   G+  
Subjt:  SHSHSRRTIVARAQAQP-------RRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESL------KWYVQAELLHSRFAMLGISGILLTDLLRVTGVSK

Query:  VPV---WYTAG----AAEYGF-ANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIKNAHDWKLKEI
              W+  G    A  Y + A+  TLF++++ LMGF E +R  D+ +PGS  ++  F GLE  L G   P YPGGP  NPLG  KD K+  + KLKE+
Subjt:  VPV---WYTAG----AAEYGF-ANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIKNAHDWKLKEI

Query:  KNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTL
        KNGRLAM+A++G F+Q  VT  GP  NL++HL++P +  ++ +L
Subjt:  KNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTL

AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A41.1e-5451.72Show/hide
Query:  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVET
        WLPGL  P +L GSLAGD GFDPLGLAEDPE+LKW+VQAEL++ R+AMLG++G+LL ++    G+  VP WY AG  +Y FA+  TLF+++ +L  +VE 
Subjt:  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVET

Query:  KRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQ
        +R+ D K+PGS  Q+  F   + +L   E GYPGG + NPL  A       + K KE+ NGRLAM+A +G  VQ  VT  GP +NL++HLS+PWH TI+Q
Subjt:  KRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQ

Query:  TLS
        T +
Subjt:  TLS

AT3G61470.1 photosystem I light harvesting complex gene 24.5e-5148.58Show/hide
Query:  TIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETL
        ++ A A    R  W PG  PP  LDGSL GDFGFDPLGL+ DP+SLKW VQAE++H R+AMLG +GI + + L   G+   P WYTAG  EY F +K TL
Subjt:  TIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETL

Query:  FIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNL
        F+V+L+L+G+ E +R+ D   PGS   +  F      L G + GYPGG   +PLG          + + KEIKNGRLAM+A++G + Q   T  GPIDNL
Subjt:  FIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNL

Query:  VEHLSNPWHKTI
          HL++P H TI
Subjt:  VEHLSNPWHKTI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTTCTTCACTCTCAGCGGCCACACCCTTGGCTGTGCAGGTGCGGCCCTGTTCTAGTTCTTGGTCTCACTCCGCCATTTCCAACACCTTCTTTTCTCCATCATT
CACCCCAAGAGAAAGACCACACTCCCACTCCCACTCCCGACGGACAATCGTGGCACGAGCCCAAGCTCAGCCGCGCCGGACTTGGCTCCCCGGCCTCGACCCCCCACCGC
ACCTCGATGGAAGTCTGGCCGGCGATTTCGGATTCGACCCACTTGGGCTCGCCGAGGACCCCGAAAGCTTGAAGTGGTACGTCCAAGCGGAGCTCCTCCATTCTCGATTC
GCCATGCTCGGAATCTCCGGAATTCTCCTCACAGACCTGCTTCGTGTTACAGGAGTCAGCAAAGTACCAGTTTGGTACACTGCGGGTGCGGCGGAATACGGGTTCGCCAA
TAAAGAAACCCTCTTCATCGTTCAGCTGCTGTTGATGGGGTTTGTAGAAACCAAAAGATACATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTG
GGTTGGAAGCCGCTCTCGAAGGTCTCGAGCCCGGATACCCTGGGGGTCCTCTGCTGAATCCACTAGGCCTGGCTAAAGATATCAAGAATGCCCATGACTGGAAGCTCAAG
GAGATTAAGAATGGACGGTTAGCGATGGTAGCCATGGTTGGGATCTTCGTGCAGGCTTATGTAACTCACGCAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCC
ATGGCACAAGACTATTATCCAGACACTCTCAAGCTCAAGTCCT
mRNA sequenceShow/hide mRNA sequence
ATGGCGGTTTCTTCACTCTCAGCGGCCACACCCTTGGCTGTGCAGGTGCGGCCCTGTTCTAGTTCTTGGTCTCACTCCGCCATTTCCAACACCTTCTTTTCTCCATCATT
CACCCCAAGAGAAAGACCACACTCCCACTCCCACTCCCGACGGACAATCGTGGCACGAGCCCAAGCTCAGCCGCGCCGGACTTGGCTCCCCGGCCTCGACCCCCCACCGC
ACCTCGATGGAAGTCTGGCCGGCGATTTCGGATTCGACCCACTTGGGCTCGCCGAGGACCCCGAAAGCTTGAAGTGGTACGTCCAAGCGGAGCTCCTCCATTCTCGATTC
GCCATGCTCGGAATCTCCGGAATTCTCCTCACAGACCTGCTTCGTGTTACAGGAGTCAGCAAAGTACCAGTTTGGTACACTGCGGGTGCGGCGGAATACGGGTTCGCCAA
TAAAGAAACCCTCTTCATCGTTCAGCTGCTGTTGATGGGGTTTGTAGAAACCAAAAGATACATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTG
GGTTGGAAGCCGCTCTCGAAGGTCTCGAGCCCGGATACCCTGGGGGTCCTCTGCTGAATCCACTAGGCCTGGCTAAAGATATCAAGAATGCCCATGACTGGAAGCTCAAG
GAGATTAAGAATGGACGGTTAGCGATGGTAGCCATGGTTGGGATCTTCGTGCAGGCTTATGTAACTCACGCAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCC
ATGGCACAAGACTATTATCCAGACACTCTCAAGCTCAAGTCCT
Protein sequenceShow/hide protein sequence
MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRTIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRF
AMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLK
EIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP