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MS018894 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018894
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCalcium-binding EF-hand
Genome locationscaffold89:244777..245052
RNA-Seq ExpressionMS018894
SyntenyMS018894
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060899.1 putative Calcium-binding EF-hand family protein [Cucumis melo var. makuwa]3.4e-2975.82Show/hide
Query:  MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL
        MGNS S  YKRVLVPF+EEQLA VFKNHD DGDG LTKEELK AF YLGSRFS FR EEAL  AD +GDGVISM EM KLI YAK+  YT+
Subjt:  MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL

KAG6585662.1 hypothetical protein SDJN03_18395, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3075.82Show/hide
Query:  MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL
        MGNS S  YKRVLVP TEEQLAG+FK+HD DGDG+LTKEELK AF+YLGSRFS+FRA+EAL  ADADGDG I+M EMSKLI Y K+  YTL
Subjt:  MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL

KAG6598376.1 hypothetical protein SDJN03_08154, partial [Cucurbita argyrosperma subsp. sororia]1.4e-3078.02Show/hide
Query:  MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL
        MGNS S  YKRVLVPF+EEQLA VFKNHD DGDG+LTKEELK AF YLGSRFS+FR EEAL  AD DGDG ISM EM KLI YAKS  YTL
Subjt:  MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL

KAG7020569.1 hypothetical protein SDJN02_17255, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-2871.43Show/hide
Query:  MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL
        MGN+ S NYKRVLVPFTEEQLA +FK+HD DGDG+L+KEELK AF+YLGSRFS+FR +EAL  AD +GDG ISM EM+KLI Y K   YTL
Subjt:  MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL

KAG7029343.1 Calcium-binding protein CML37, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-3078.02Show/hide
Query:  MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL
        MGNS S  YKRVLVPF+EEQLA VFKNHD DGDG+LTKEELK AF YLGSRFS+FR EEAL  AD DGDG ISM EM KLI YAKS  YTL
Subjt:  MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL

TrEMBL top hitse value%identityAlignment
A0A0A0LP43 Uncharacterized protein1.6e-1659.04Show/hide
Query:  MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVY
        MG S  L +K      TE ++A VFKNHD DGDGRLTKEELK+AF YLG +F+ FR  +AL  AD + D VIS  EMSKLI+Y
Subjt:  MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVY

A0A0A0LRB6 Uncharacterized protein6.3e-2974.73Show/hide
Query:  MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL
        MGNS S  YKRVLVPF+EEQLA VFKNHD DGDG LTKEELK AF YLGSRF  FR EEAL  AD +GDGVISM EM KLI YAK+  YT+
Subjt:  MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL

A0A2N9FYQ0 Uncharacterized protein1.2e-1953.49Show/hide
Query:  LNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTLG
        +++KR  +PFTEEQL  +FK+HD+DGDG+L+++E+K AF YLGSR+ A+RA +A+ +ADAD DG I   E+ KL+ YA    YT+G
Subjt:  LNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTLG

A0A5A7V5B0 Putative Calcium-binding EF-hand family protein1.6e-2975.82Show/hide
Query:  MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL
        MGNS S  YKRVLVPF+EEQLA VFKNHD DGDG LTKEELK AF YLGSRFS FR EEAL  AD +GDGVISM EM KLI YAK+  YT+
Subjt:  MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL

A0A7N2KRS3 Uncharacterized protein8.5e-1851.72Show/hide
Query:  SLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTLG
        ++ +KR  VPF E+QL  +FK+HD DGDG+L+++ELK AF YLGSR+ A+R ++AL  ADA+ DG I+  E+ KL+ YA    YT+G
Subjt:  SLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTLG

SwissProt top hitse value%identityAlignment
P05933 Calmodulin4.2e-0642.19Show/hide
Query:  EEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLI
        EE++   FK  D DG+G +T EEL    + LG R S     + +  AD DGDGVI+  E S++I
Subjt:  EEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLI

Q6L4D4 Probable calcium-binding protein CML154.2e-0636.36Show/hide
Query:  PFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKL
        P  E++   VF+  D++GDGR+++ EL A F  +G   +       +  AD+DGDG IS+GE + +
Subjt:  PFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKL

Q8RZB5 Probable calcium-binding protein CML108.5e-0740.91Show/hide
Query:  PFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKL
        P  EE++  VF+  D++GDGR+++ EL A F  LG   +       +  ADADGDG IS+ E + L
Subjt:  PFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKL

Q9SRE7 Calcium-binding protein CML392.5e-0642.03Show/hide
Query:  FTEEQ---LAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLI
        F EE+   L  VF   D++ DGR++ EELK +F  LG + S   AE A+ ++D DGDG++ + E + LI
Subjt:  FTEEQ---LAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLI

Q9ZSA4 Calcium-dependent protein kinase 273.2e-0635.16Show/hide
Query:  YKRVLVPF-----TEEQLAG---VFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL
        +K+V++ F     +EE++ G   +F N D+D  G +T EELK   + LGS  S    E+ +  AD DG+G I + E     + A  H Y L
Subjt:  YKRVLVPF-----TEEQLAG---VFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL

Arabidopsis top hitse value%identityAlignment
AT1G76640.1 Calcium-binding EF-hand family protein1.7e-0742.03Show/hide
Query:  FTEEQ---LAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLI
        F EE+   L  VF   D++ DGR++ EELK +F  LG + S   AE A+ ++D DGDG++ + E + LI
Subjt:  FTEEQ---LAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLI

AT4G04695.1 calcium-dependent protein kinase 315.1e-0735.29Show/hide
Query:  KRVLVPFTEEQLAG---VFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL
        K +    +EE++ G   +F N D+D  G +T EELK   + LGS  S    E+ +  AD DG+G I + E     + A  H Y L
Subjt:  KRVLVPFTEEQLAG---VFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL

AT4G04700.1 calcium-dependent protein kinase 272.3e-0735.16Show/hide
Query:  YKRVLVPF-----TEEQLAG---VFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL
        +K+V++ F     +EE++ G   +F N D+D  G +T EELK   + LGS  S    E+ +  AD DG+G I + E     + A  H Y L
Subjt:  YKRVLVPF-----TEEQLAG---VFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTL

AT5G12180.1 calcium-dependent protein kinase 176.6e-0735.06Show/hide
Query:  NYKRVLVP-----FTEEQLAG---VFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGE
        N+K+V +       +EE++ G   +FK  D+D  G +T EEL+   +  G+R S +  ++ +  ADADG+G I  GE
Subjt:  NYKRVLVP-----FTEEQLAG---VFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGE

AT5G19360.1 calcium-dependent protein kinase 346.6e-0735.06Show/hide
Query:  NYKRVLVP-----FTEEQLAG---VFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGE
        N+K+V +       +EE++ G   +FK  D+D  G +T EEL+   +  G+R S +  ++ +  ADADG+G I  GE
Subjt:  NYKRVLVP-----FTEEQLAG---VFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAACTCCGGCAGTTTGAACTACAAGCGCGTTCTGGTTCCCTTCACGGAGGAGCAACTGGCTGGGGTTTTCAAGAACCATGACAGTGATGGAGATGGGAGGCTCAC
CAAAGAAGAGTTGAAGGCTGCCTTCAGTTATCTCGGTTCGAGGTTCAGCGCCTTCCGCGCCGAGGAGGCCCTCCTTGTCGCCGACGCCGACGGTGACGGTGTCATAAGTA
TGGGGGAGATGAGTAAACTGATTGTGTATGCTAAAAGTCATAACTATACTCTTGGC
mRNA sequenceShow/hide mRNA sequence
ATGGGAAACTCCGGCAGTTTGAACTACAAGCGCGTTCTGGTTCCCTTCACGGAGGAGCAACTGGCTGGGGTTTTCAAGAACCATGACAGTGATGGAGATGGGAGGCTCAC
CAAAGAAGAGTTGAAGGCTGCCTTCAGTTATCTCGGTTCGAGGTTCAGCGCCTTCCGCGCCGAGGAGGCCCTCCTTGTCGCCGACGCCGACGGTGACGGTGTCATAAGTA
TGGGGGAGATGAGTAAACTGATTGTGTATGCTAAAAGTCATAACTATACTCTTGGC
Protein sequenceShow/hide protein sequence
MGNSGSLNYKRVLVPFTEEQLAGVFKNHDSDGDGRLTKEELKAAFSYLGSRFSAFRAEEALLVADADGDGVISMGEMSKLIVYAKSHNYTLG