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MS018905 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018905
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold89:317659..317887
RNA-Seq ExpressionMS018905
SyntenyMS018905
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW57183.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.3e-0437.68Show/hide
Query:  LYPSWCVMCKMDGEDSQHLFLRCSFAANCWSKQLNFNLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLN
        LYP WC++CK DGE   HLFL C      W K  N       P  S  G+  + +  F  V   +L LN
Subjt:  LYPSWCVMCKMDGEDSQHLFLRCSFAANCWSKQLNFNLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLN

RVW96953.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]6.9e-0435.53Show/hide
Query:  LYPSWCVMCKMDGEDSQHLFLRCSFAANCWSKQLNF-NLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLNAVVSFL
        LYP WC++CK +GE   HLFL C      W K  N   L+ + P+S  D L     G    ++ K LW  A ++ +
Subjt:  LYPSWCVMCKMDGEDSQHLFLRCSFAANCWSKQLNF-NLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLNAVVSFL

XP_022153214.1 uncharacterized protein LOC111020765 [Momordica charantia]4.3e-0637.66Show/hide
Query:  LYPSWCVMCKMDGEDSQHLFLRCSFAANCWSKQLN-FNLSRVFPKSSSDGLFQLIYGTFFVVQD-KILWLNAVVSFL
        L PS+C +C   GED  HLF  C FA+ CW+   + FN+   F   + D ++QL++G   +    + LWLN V + L
Subjt:  LYPSWCVMCKMDGEDSQHLFLRCSFAANCWSKQLN-FNLSRVFPKSSSDGLFQLIYGTFFVVQD-KILWLNAVVSFL

XP_030479135.1 uncharacterized protein LOC115696374 [Cannabis sativa]8.1e-0540.28Show/hide
Query:  PSWCVMCKMDGEDSQHLFLRCSFAANCWSKQL-NFNLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLNAVVS
        P WCV CK +GE+ +HLFL C F++  WS  L  F L    P+S    L   I G+    +  ILW  AV++
Subjt:  PSWCVMCKMDGEDSQHLFLRCSFAANCWSKQL-NFNLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLNAVVS

XP_030505044.1 uncharacterized protein LOC115720016 [Cannabis sativa]1.4e-0440.28Show/hide
Query:  PSWCVMCKMDGEDSQHLFLRCSFAANCWSKQL-NFNLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLNAVVS
        P WCV CK  GE+ +HLFL C F++  WS  L  F L    P+S    L   I G+    +  ILW  AV++
Subjt:  PSWCVMCKMDGEDSQHLFLRCSFAANCWSKQL-NFNLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLNAVVS

TrEMBL top hitse value%identityAlignment
A0A2N9EVP6 Uncharacterized protein8.8e-0538.03Show/hide
Query:  WCVMCKMDGEDSQHLFLRCSFAANCWSKQL-NFNLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLNAVVSF
        WC MC+MDGE+  HL + CSFA++ W+  L +F +S VFP    D +  L+Y  F    +   ++N++  F
Subjt:  WCVMCKMDGEDSQHLFLRCSFAANCWSKQL-NFNLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLNAVVSF

A0A438FB27 Retrovirus-related Pol polyprotein from transposon TNT 1-942.5e-0437.68Show/hide
Query:  LYPSWCVMCKMDGEDSQHLFLRCSFAANCWSKQLNFNLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLN
        LYP WC++CK DGE   HLFL C      W K  N       P  S  G+  + +  F  V   +L LN
Subjt:  LYPSWCVMCKMDGEDSQHLFLRCSFAANCWSKQLNFNLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLN

A0A6J1DIE2 uncharacterized protein LOC1110207652.1e-0637.66Show/hide
Query:  LYPSWCVMCKMDGEDSQHLFLRCSFAANCWSKQLN-FNLSRVFPKSSSDGLFQLIYGTFFVVQD-KILWLNAVVSFL
        L PS+C +C   GED  HLF  C FA+ CW+   + FN+   F   + D ++QL++G   +    + LWLN V + L
Subjt:  LYPSWCVMCKMDGEDSQHLFLRCSFAANCWSKQLN-FNLSRVFPKSSSDGLFQLIYGTFFVVQD-KILWLNAVVSFL

A0A803PZR8 Uncharacterized protein6.7e-0540.28Show/hide
Query:  PSWCVMCKMDGEDSQHLFLRCSFAANCWSKQL-NFNLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLNAVVS
        P WCV CK  GE+ +HLFL C F++  WS  L  F L    P+S    L   I G+    +  ILW  AV++
Subjt:  PSWCVMCKMDGEDSQHLFLRCSFAANCWSKQL-NFNLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLNAVVS

A0A803QGT5 Uncharacterized protein3.9e-0540.28Show/hide
Query:  PSWCVMCKMDGEDSQHLFLRCSFAANCWSKQL-NFNLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLNAVVS
        P WCV CK +GE+ +HLFL C F++  WS  L  F L    P+S    L   I G+    +  ILW  AV++
Subjt:  PSWCVMCKMDGEDSQHLFLRCSFAANCWSKQL-NFNLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLNAVVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGTATCCCTCTTGGTGTGTTATGTGTAAGATGGATGGGGAAGATAGCCAACACTTATTTCTTCGATGTTCTTTTGCTGCGAATTGTTGGAGTAAGCAGCTCAATTTTAA
CTTGTCTCGGGTTTTTCCTAAGAGTAGTTCTGACGGGTTGTTCCAGCTCATTTATGGAACTTTCTTCGTTGTTCAAGACAAAATTTTGTGGTTGAATGCAGTAGTAAGTT
TTCTT
mRNA sequenceShow/hide mRNA sequence
TTGTATCCCTCTTGGTGTGTTATGTGTAAGATGGATGGGGAAGATAGCCAACACTTATTTCTTCGATGTTCTTTTGCTGCGAATTGTTGGAGTAAGCAGCTCAATTTTAA
CTTGTCTCGGGTTTTTCCTAAGAGTAGTTCTGACGGGTTGTTCCAGCTCATTTATGGAACTTTCTTCGTTGTTCAAGACAAAATTTTGTGGTTGAATGCAGTAGTAAGTT
TTCTT
Protein sequenceShow/hide protein sequence
LYPSWCVMCKMDGEDSQHLFLRCSFAANCWSKQLNFNLSRVFPKSSSDGLFQLIYGTFFVVQDKILWLNAVVSFL