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MS018934 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018934
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold69:106205..106683
RNA-Seq ExpressionMS018934
SyntenyMS018934
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036886.1 zf-RVT domain-containing protein [Cucumis melo var. makuwa]4.3e-2439.02Show/hide
Query:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRS------
        +F+LP  V ++V++ILRS+LWK +E  R G KVAW DVC+P  +GGLG+R   SWN A  +K++WL+  +  SL        I+ G  L  + S      
Subjt:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRS------

Query:  LWRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRLKNKIN
         +R IL   +  +  V+  +G+G RC VW D WL G  I  + G++++YD AS    RL + I+
Subjt:  LWRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRLKNKIN

KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]2.4e-2236.47Show/hide
Query:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRSLW----
        +F+LP  V ++V++ILRS+LW+ +E  R G KVAW DVC+P  +GGLG+R   SWN A+ +K++WL+  +     G L+   +    ++L  RSLW    
Subjt:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRSLW----

Query:  --------RDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRLKNKIN
                R IL   +  + LV+  +G+G    VW D WL    I  + G++++YD AS  + RL + I+
Subjt:  --------RDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRLKNKIN

TYJ96685.1 zf-RVT domain-containing protein [Cucumis melo var. makuwa]4.3e-2439.02Show/hide
Query:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRS------
        +F+LP  V ++V++ILRS+LWK +E  R G KVAW DVC+P  +GGLG+R   SWN A  +K++WL+  +  SL        I+ G  L  + S      
Subjt:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRS------

Query:  LWRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRLKNKIN
         +R IL   +  +  V+  +G+G RC VW D WL G  I  + G++++YD AS    RL + I+
Subjt:  LWRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRLKNKIN

XP_031740402.1 uncharacterized protein LOC116403409 [Cucumis sativus]6.2e-2337.74Show/hide
Query:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRS------
        +F+LP +V  DV++ILR++LW+  E  R G KVAW +VC+P  +GGL +R   SWN A+ +K++WLL +   SL        I+ G  LL + +      
Subjt:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRS------

Query:  LWRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRL
         +R+IL   D+ +  V+  +G+G++C VW   W+ G  I  +FG+++IYD  S    RL
Subjt:  LWRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRL

XP_038891644.1 uncharacterized protein LOC120081037 [Benincasa hispida]6.9e-2240Show/hide
Query:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRSLW--RD
        IF+LP  + H+V+R+LRS+LWK     R G +VAW +VC+PL  GG GV+H+ S N++ IMK         S +G                 RS W  R 
Subjt:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRSLW--RD

Query:  ILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRL
        IL   D F+ LV+  I DG+ CFVW D WLSG  I   +   ++YD+ SS   +L
Subjt:  ILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRL

TrEMBL top hitse value%identityAlignment
A0A2N9H447 Reverse transcriptase domain-containing protein3.6e-2436.65Show/hide
Query:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRSL-----
        IFILP +VV  +E+    FLWK +E  + G KV+W  VC+P ++GGLG++ +E WN A +MK IW L+    SL        ++ G     ++       
Subjt:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRSL-----

Query:  -WRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRLKN
         WR +L +    R L+ F +GDGK  F+WHD W     +Y ++G +I+YD ASS   ++ +
Subjt:  -WRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRLKN

A0A2N9J3H3 Reverse transcriptase domain-containing protein3.6e-2436.65Show/hide
Query:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRSL-----
        IFILP +VV  +E+    FLWK +E  + G KV+W  VC+P ++GGLG++ +E WN A +MK IW L+    SL        ++ G     ++       
Subjt:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRSL-----

Query:  -WRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRLKN
         WR +L +    R L+ F +GDGK  F+WHD W     +Y ++G +I+YD ASS   ++ +
Subjt:  -WRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRLKN

A0A2N9JAF9 Reverse transcriptase domain-containing protein1.4e-2337.66Show/hide
Query:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRSL-----
        IFILP +VV  +E+    FLW+ ++  R G KV+W  VC+P +KGGLG++ +E WN A +MK IW L+    SL        ++ G     +++      
Subjt:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRSL-----

Query:  -WRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASS
         WR +L++  V R L+ + IGDG   F+WHD W    ++Y  +G +I+ D ASS
Subjt:  -WRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASS

A0A5A7T440 Zf-RVT domain-containing protein2.1e-2439.02Show/hide
Query:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRS------
        +F+LP  V ++V++ILRS+LWK +E  R G KVAW DVC+P  +GGLG+R   SWN A  +K++WL+  +  SL        I+ G  L  + S      
Subjt:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRS------

Query:  LWRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRLKNKIN
         +R IL   +  +  V+  +G+G RC VW D WL G  I  + G++++YD AS    RL + I+
Subjt:  LWRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRLKNKIN

A0A5D3BDZ6 Zf-RVT domain-containing protein2.1e-2439.02Show/hide
Query:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRS------
        +F+LP  V ++V++ILRS+LWK +E  R G KVAW DVC+P  +GGLG+R   SWN A  +K++WL+  +  SL        I+ G  L  + S      
Subjt:  IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRS------

Query:  LWRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRLKNKIN
         +R IL   +  +  V+  +G+G RC VW D WL G  I  + G++++YD AS    RL + I+
Subjt:  LWRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRLKNKIN

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657502.6e-1134.06Show/hide
Query:  ILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGL----YFLG-IVFGLFLLP---LRS
        +LP  +++ ++++ R+FLW     ++    V WS VC P ++GGLGVR  +S N A I K+ W L    +SL   +    Y +G I    +L+P     S
Subjt:  ILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGL----YFLG-IVFGLFLLP---LRS

Query:  LWRDI-LSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGR
         WR I + + DV    V +  GDG++   W D W+SG+
Subjt:  LWRDI-LSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGR

Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.8e-1030.83Show/hide
Query:  FILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRSLWRDILS
        F LP+  + +++ I  SFLW   E      KVAWSDVC P  +GGLG+R L+  N  +   +             G   LG            +W+ IL 
Subjt:  FILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRSLWRDILS

Query:  VWDVFRPLVQFAIGDGKRCFVWHDVWLS-GRLI
           +    V+  I +G     W D W   GRLI
Subjt:  VWDVFRPLVQFAIGDGKRCFVWHDVWLS-GRLI

AT4G29090.1 Ribonuclease H-like superfamily protein1.1e-0622.79Show/hide
Query:  FILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLL--PLRS----L
        F+LP  V   +  +L  F W+ ++  +     AW  +     +GG+G + +E++N A + K +W +     SL   ++          L  PL S    +
Subjt:  FILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLL--PLRS----L

Query:  WRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGR
        W+ I +  ++ R   +  +G+G+   +W   WL  +
Subjt:  WRDILSVWDVFRPLVQFAIGDGKRCFVWHDVWLSGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATATTTATCCTTCCGACTCAGGTTGTTCATGATGTTGAGCGGATTCTGCGTTCTTTCCTATGGAAGAGGCGTGAGAGCGAGCGGTCGGGGACTAAGGTGGCTTGGTCTGA
TGTGTGTATTCCTTTGCGGAAGGGTGGTTTGGGTGTGCGTCACCTGGAATCTTGGAATTCTGCAACTATAATGAAGCTGATCTGGCTTCTCTGGCTCTCTTTGAGTAGCT
TGGGAGGAGGCTTATATTTTTTGGGGATTGTATTTGGACTGTTCCTGCTTCCCCTTCGCTCTCTTTGGCGAGATATTCTTTCTGTATGGGATGTTTTTCGGCCTCTGGTT
CAGTTTGCTATTGGAGATGGTAAGCGTTGTTTTGTGTGGCATGATGTTTGGCTTTCGGGGCGTCTAATTTATCCGAGGTTTGGTGATCAGATTATCTATGATGTTGCAAG
CTCATCCAGGCGAAGGTTGAAAAATAAGATAAAC
mRNA sequenceShow/hide mRNA sequence
ATATTTATCCTTCCGACTCAGGTTGTTCATGATGTTGAGCGGATTCTGCGTTCTTTCCTATGGAAGAGGCGTGAGAGCGAGCGGTCGGGGACTAAGGTGGCTTGGTCTGA
TGTGTGTATTCCTTTGCGGAAGGGTGGTTTGGGTGTGCGTCACCTGGAATCTTGGAATTCTGCAACTATAATGAAGCTGATCTGGCTTCTCTGGCTCTCTTTGAGTAGCT
TGGGAGGAGGCTTATATTTTTTGGGGATTGTATTTGGACTGTTCCTGCTTCCCCTTCGCTCTCTTTGGCGAGATATTCTTTCTGTATGGGATGTTTTTCGGCCTCTGGTT
CAGTTTGCTATTGGAGATGGTAAGCGTTGTTTTGTGTGGCATGATGTTTGGCTTTCGGGGCGTCTAATTTATCCGAGGTTTGGTGATCAGATTATCTATGATGTTGCAAG
CTCATCCAGGCGAAGGTTGAAAAATAAGATAAAC
Protein sequenceShow/hide protein sequence
IFILPTQVVHDVERILRSFLWKRRESERSGTKVAWSDVCIPLRKGGLGVRHLESWNSATIMKLIWLLWLSLSSLGGGLYFLGIVFGLFLLPLRSLWRDILSVWDVFRPLV
QFAIGDGKRCFVWHDVWLSGRLIYPRFGDQIIYDVASSSRRRLKNKIN