; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS018943 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018943
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionZinc CCHC-type-like protein
Genome locationscaffold20:12377..12688
RNA-Seq ExpressionMS018943
SyntenyMS018943
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH80348.1 hypothetical protein [Trifolium medium]8.3e-1640.19Show/hide
Query:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDY--FSDTGHNTLRTK
        + +A +LGN +  FEE+   +++ +G + LR+RV++D+ KPL+RG KLN  G +  +WV  +Y RLP+FC+ CG+I H ++DC+D     +  ++ L  K
Subjt:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDY--FSDTGHNTLRTK

Query:  HQ-YGPW
         Q +GPW
Subjt:  HQ-YGPW

PNX92709.1 cysteine desulfurase mitochondrial-like [Trifolium pratense]1.1e-1543.52Show/hide
Query:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDC---DDYFSDTGHNTLRT
        + MA +LGN L  FEE+   D + +G + LR+RV++D+ KPL+RG KL+  G    +WV  +Y RLP+FC+ CG+I H ++DC   DD+ +D  ++ L  
Subjt:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDC---DDYFSDTGHNTLRT

Query:  KHQ-YGPW
        K Q +GPW
Subjt:  KHQ-YGPW

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]5.2e-2657.69Show/hide
Query:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDYFSDTGHNTLRTKHQ
        K+MA RLGNA+  FE++  +  +   G  LRVRV  D+ KPL RGIKLNLDGP GG W+ IQY RLPDF YHCG++DHILKDC D   D+    L    Q
Subjt:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDYFSDTGHNTLRTKHQ

Query:  YGPW
        YGPW
Subjt:  YGPW

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]4.4e-2552.88Show/hide
Query:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDYFSDTGHNTLRTKHQ
        K+MAIRLGNA+  F ++ C++     G  LR+RV +DI+KPLRRGIK+N+DGP GG W+ IQY RLPDFCY CG I H   DCD  +     +  R   +
Subjt:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDYFSDTGHNTLRTKHQ

Query:  YGPW
        YGPW
Subjt:  YGPW

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.4e-2661.54Show/hide
Query:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDYFSDTGHNTLRTKHQ
        + MAIRLGNAL GFEE  CDDL+   G  LRVRV LDISKPLRRGIKLNLDGP GG W+ IQY RLPDFCYHCG                  ++ R KHQ
Subjt:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDYFSDTGHNTLRTKHQ

Query:  YGPW
        YG W
Subjt:  YGPW

TrEMBL top hitse value%identityAlignment
A0A2K3MPT1 Cysteine desulfurase mitochondrial-like5.3e-1643.52Show/hide
Query:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDC---DDYFSDTGHNTLRT
        + MA +LGN L  FEE+   D + +G + LR+RV++D+ KPL+RG KL+  G    +WV  +Y RLP+FC+ CG+I H ++DC   DD+ +D  ++ L  
Subjt:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDC---DDYFSDTGHNTLRT

Query:  KHQ-YGPW
        K Q +GPW
Subjt:  KHQ-YGPW

A0A392M033 CCHC-type domain-containing protein (Fragment)4.0e-1640.19Show/hide
Query:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDY--FSDTGHNTLRTK
        + +A +LGN +  FEE+   +++ +G + LR+RV++D+ KPL+RG KLN  G +  +WV  +Y RLP+FC+ CG+I H ++DC+D     +  ++ L  K
Subjt:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDY--FSDTGHNTLRTK

Query:  HQ-YGPW
         Q +GPW
Subjt:  HQ-YGPW

A0A6J1BSZ1 uncharacterized protein LOC1110054812.5e-2657.69Show/hide
Query:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDYFSDTGHNTLRTKHQ
        K+MA RLGNA+  FE++  +  +   G  LRVRV  D+ KPL RGIKLNLDGP GG W+ IQY RLPDF YHCG++DHILKDC D   D+    L    Q
Subjt:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDYFSDTGHNTLRTKHQ

Query:  YGPW
        YGPW
Subjt:  YGPW

A0A6J1DU55 uncharacterized protein LOC1110231352.1e-2552.88Show/hide
Query:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDYFSDTGHNTLRTKHQ
        K+MAIRLGNA+  F ++ C++     G  LR+RV +DI+KPLRRGIK+N+DGP GG W+ IQY RLPDFCY CG I H   DCD  +     +  R   +
Subjt:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDYFSDTGHNTLRTKHQ

Query:  YGPW
        YGPW
Subjt:  YGPW

A0A6J1DX30 uncharacterized protein LOC1110248746.6e-2761.54Show/hide
Query:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDYFSDTGHNTLRTKHQ
        + MAIRLGNAL GFEE  CDDL+   G  LRVRV LDISKPLRRGIKLNLDGP GG W+ IQY RLPDFCYHCG                  ++ R KHQ
Subjt:  KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDYFSDTGHNTLRTKHQ

Query:  YGPW
        YG W
Subjt:  YGPW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAATCTATGGCAATCCGTCTTGGCAATGCACTGAGTGGATTTGAAGAGATTGTCTGTGATGATTTGAGTTCTTTAGGGGGCTATATATTGCGAGTTCGTGTTACGTTGGA
TATCTCTAAGCCTCTGAGACGAGGGATAAAATTAAATTTAGATGGTCCTAAAGGTGGAGTTTGGGTCTCAATCCAATACGGACGTCTCCCTGATTTCTGCTATCACTGTG
GTAAGATTGATCATATTCTTAAAGATTGCGATGATTATTTTTCTGATACAGGACACAATACTCTTCGAACAAAGCACCAATATGGACCATGG
mRNA sequenceShow/hide mRNA sequence
AAATCTATGGCAATCCGTCTTGGCAATGCACTGAGTGGATTTGAAGAGATTGTCTGTGATGATTTGAGTTCTTTAGGGGGCTATATATTGCGAGTTCGTGTTACGTTGGA
TATCTCTAAGCCTCTGAGACGAGGGATAAAATTAAATTTAGATGGTCCTAAAGGTGGAGTTTGGGTCTCAATCCAATACGGACGTCTCCCTGATTTCTGCTATCACTGTG
GTAAGATTGATCATATTCTTAAAGATTGCGATGATTATTTTTCTGATACAGGACACAATACTCTTCGAACAAAGCACCAATATGGACCATGG
Protein sequenceShow/hide protein sequence
KSMAIRLGNALSGFEEIVCDDLSSLGGYILRVRVTLDISKPLRRGIKLNLDGPKGGVWVSIQYGRLPDFCYHCGKIDHILKDCDDYFSDTGHNTLRTKHQYGPW