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MS018971 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018971
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTranscription factor UPBEAT1
Genome locationscaffold20:362393..362656
RNA-Seq ExpressionMS018971
SyntenyMS018971
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHY20045.1 basic helix-loop-helix protein [Populus simonii x Populus nigra]6.4e-0966Show/hide
Query:  KRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
        +R+R L+K+IPN+ES+ L+GLFRETADY+L LQM+V+VMQ +V VL GSD
Subjt:  KRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
KAA0038125.1 basic helix-loop-helix protein [Cucumis melo var. makuwa]4.0e-1966.67Show/hide
Query:  DRVSDGQIARLARRKQ----PKLPRSRSDKRVCCKRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
        D VSD +IA+   +K+     +L RS S+KR+C KRIR+LRKMIP +ES+ELNGLFRETADY++WLQMKVR+MQALVHVL GSD
Subjt:  DRVSDGQIARLARRKQ----PKLPRSRSDKRVCCKRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
KAF9863568.1 hypothetical protein H0E87_014084 [Populus deltoides]6.4e-0966Show/hide
Query:  KRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
        +R+R L+K+IPN+ES+ L+GLFRETADY+L LQM+V+VMQ +V VL GSD
Subjt:  KRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
KGN58133.1 hypothetical protein Csa_017541 [Cucumis sativus]8.9e-1965.06Show/hide
Query:  DRVSDGQIAR-LARRKQPKLPRS--RSDKRVCCKRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
        D VSD +IA+ + ++K   + RS   S+KR+C KRIRRL+KM+P +ES+ELNGLFRETADY++WLQMKVR+MQALVHVL GSD
Subjt:  DRVSDGQIAR-LARRKQPKLPRS--RSDKRVCCKRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
XP_019427947.1 PREDICTED: transcription factor UPBEAT1-like [Lupinus angustifolius]6.4e-0962Show/hide
Query:  KRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
        +++R L+K++PN+ES+EL+GLFRETADY+L LQ +VR+M+ LV+VL GSD
Subjt:  KRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
TrEMBL top hitse value%identityAlignment
A0A0A0L8J6 Uncharacterized protein4.3e-1965.06Show/hide
Query:  DRVSDGQIAR-LARRKQPKLPRS--RSDKRVCCKRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
        D VSD +IA+ + ++K   + RS   S+KR+C KRIRRL+KM+P +ES+ELNGLFRETADY++WLQMKVR+MQALVHVL GSD
Subjt:  DRVSDGQIAR-LARRKQPKLPRS--RSDKRVCCKRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
A0A3G0Z5L8 Basic helix-loop-helix protein3.1e-0966Show/hide
Query:  KRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
        +R+R L+K+IPN+ES+ L+GLFRETADY+L LQM+V+VMQ +V VL GSD
Subjt:  KRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
A0A4V5ZXB7 Uncharacterized protein5.3e-0966Show/hide
Query:  KRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
        +R+R L+K+IP++ES+ L+GLFRETADY+L LQM+VRVMQ +V VL GSD
Subjt:  KRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
A0A5A7T9M0 Basic helix-loop-helix protein1.9e-1966.67Show/hide
Query:  DRVSDGQIARLARRKQ----PKLPRSRSDKRVCCKRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
        D VSD +IA+   +K+     +L RS S+KR+C KRIR+LRKMIP +ES+ELNGLFRETADY++WLQMKVR+MQALVHVL GSD
Subjt:  DRVSDGQIARLARRKQ----PKLPRSRSDKRVCCKRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD
B9GSV5 Uncharacterized protein6.9e-0943.56Show/hide
Query:  DRVSDGQIAR---LARRKQPKLPRSRSDKRVCCK------------------RIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGS
        ++VS+ Q  R   L R+K  +  RS+   R+  K                  R+R L+K+IPN+ES+ L+GLFRETADY+L LQM+V+VMQ +V VL GS
Subjt:  DRVSDGQIAR---LARRKQPKLPRSRSDKRVCCK------------------RIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGS

Query:  D
        D
Subjt:  D
SwissProt top hitse value%identityAlignment
O22901 Transcription factor UPBEAT15.6e-0842.86Show/hide
Query:  IARLARRKQPKLPRSRSDKRVCCKRIRRLRKMIPNTESVE-LNGLFRETADYVLWLQMKVRVMQALVHVL
        + ++  R +  +  SR   R   +R++ L++++PNT++ E L+GLFR+TADY+L L+MKV+VMQ +V VL
Subjt:  IARLARRKQPKLPRSRSDKRVCCKRIRRLRKMIPNTESVE-LNGLFRETADYVLWLQMKVRVMQALVHVL
Arabidopsis top hitse value%identityAlignment
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators4.0e-0942.86Show/hide
Query:  IARLARRKQPKLPRSRSDKRVCCKRIRRLRKMIPNTESVE-LNGLFRETADYVLWLQMKVRVMQALVHVL
        + ++  R +  +  SR   R   +R++ L++++PNT++ E L+GLFR+TADY+L L+MKV+VMQ +V VL
Subjt:  IARLARRKQPKLPRSRSDKRVCCKRIRRLRKMIPNTESVE-LNGLFRETADYVLWLQMKVRVMQALVHVL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTAAGCGACGACTCAGATGATCGAGTTTCGGATGGGCAAATCGCAAGATTAGCCCGGAGGAAGCAACCGAAGTTGCCGAGGTCGAGGTCGGACAAGAGGGTTTG
TTGTAAGAGGATTAGGAGGCTGAGGAAGATGATCCCAAATACTGAATCTGTGGAGTTGAATGGGCTTTTTAGAGAGACAGCTGATTATGTTTTGTGGTTGCAAATGAAGG
TGAGGGTGATGCAGGCTTTGGTTCATGTGCTGAAAGGCTCCGAT
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTAAGCGACGACTCAGATGATCGAGTTTCGGATGGGCAAATCGCAAGATTAGCCCGGAGGAAGCAACCGAAGTTGCCGAGGTCGAGGTCGGACAAGAGGGTTTG
TTGTAAGAGGATTAGGAGGCTGAGGAAGATGATCCCAAATACTGAATCTGTGGAGTTGAATGGGCTTTTTAGAGAGACAGCTGATTATGTTTTGTGGTTGCAAATGAAGG
TGAGGGTGATGCAGGCTTTGGTTCATGTGCTGAAAGGCTCCGAT
Protein sequenceShow/hide protein sequence
MEVSDDSDDRVSDGQIARLARRKQPKLPRSRSDKRVCCKRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD