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MS018975 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018975
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpentatricopeptide repeat-containing protein At1g08070, chloroplastic-like
Genome locationscaffold20:405603..405768
RNA-Seq ExpressionMS018975
SyntenyMS018975
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031351.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]6.2e-0765.45Show/hide
Query:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG
        E   EVF QL +KDVISFNAMIMG  VN KGDEALKL A MQ+   R +  TFIG
Subjt:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG

TYK06804.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]6.2e-0765.45Show/hide
Query:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG
        E   EVF QL +KDVISFNAMIMG  VN KGDEALKL A MQ+   R +  TFIG
Subjt:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG

XP_008455016.1 PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isoform X1 [Cucumis melo]6.2e-0765.45Show/hide
Query:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG
        E   EVF QL +KDVISFNAMIMG  VN KGDEALKL A MQ+   R +  TFIG
Subjt:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG

XP_008455017.1 PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isoform X2 [Cucumis melo]6.2e-0765.45Show/hide
Query:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG
        E   EVF QL +KDVISFNAMIMG  VN KGDEALKL A MQ+   R +  TFIG
Subjt:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG

XP_022148701.1 putative pentatricopeptide repeat-containing protein At3g08820 [Momordica charantia]7.1e-1174.55Show/hide
Query:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG
        E   EVFDQL++KDVISFNAMIMG  VN KGDEALKL A+MQ+F TR TA TFIG
Subjt:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG

TrEMBL top hitse value%identityAlignment
A0A1S3BZG8 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isoform X13.0e-0765.45Show/hide
Query:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG
        E   EVF QL +KDVISFNAMIMG  VN KGDEALKL A MQ+   R +  TFIG
Subjt:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG

A0A1S3C008 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isoform X23.0e-0765.45Show/hide
Query:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG
        E   EVF QL +KDVISFNAMIMG  VN KGDEALKL A MQ+   R +  TFIG
Subjt:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG

A0A5A7SP64 Pentatricopeptide repeat-containing protein3.0e-0765.45Show/hide
Query:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG
        E   EVF QL +KDVISFNAMIMG  VN KGDEALKL A MQ+   R +  TFIG
Subjt:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG

A0A5D3C6A4 Pentatricopeptide repeat-containing protein3.0e-0765.45Show/hide
Query:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG
        E   EVF QL +KDVISFNAMIMG  VN KGDEALKL A MQ+   R +  TFIG
Subjt:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG

A0A6J1D673 putative pentatricopeptide repeat-containing protein At3g088203.5e-1174.55Show/hide
Query:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG
        E   EVFDQL++KDVISFNAMIMG  VN KGDEALKL A+MQ+F TR TA TFIG
Subjt:  EMGNEVFDQLTSKDVISFNAMIMG-TVNVKGDEALKLVAIMQDFATRSTARTFIG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAAATGGGCAATGAAGTTTTTGATCAACTAACCTCCAAAGATGTAATCTCCTTCAACGCCATGATCATGGGCACAGTTAACGTCAAAGGCGACGAGGCATTGAAGCTTGT
TGCCATAATGCAAGACTTCGCCACAAGATCGACTGCTAGAACATTTATCGGA
mRNA sequenceShow/hide mRNA sequence
GAAATGGGCAATGAAGTTTTTGATCAACTAACCTCCAAAGATGTAATCTCCTTCAACGCCATGATCATGGGCACAGTTAACGTCAAAGGCGACGAGGCATTGAAGCTTGT
TGCCATAATGCAAGACTTCGCCACAAGATCGACTGCTAGAACATTTATCGGA
Protein sequenceShow/hide protein sequence
EMGNEVFDQLTSKDVISFNAMIMGTVNVKGDEALKLVAIMQDFATRSTARTFIG