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MS018992 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018992
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold20:519393..519662
RNA-Seq ExpressionMS018992
SyntenyMS018992
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VDD57155.1 unnamed protein product, partial [Brassica oleracea]6.7e-0632.58Show/hide
Query:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLN
        W PPP +    N+D++W +     G+GWI R+   +++ AG R V    +  L EA A+  G  +L N G  + +  ETDS ++  ++N
Subjt:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLN

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]1.2e-1040Show/hide
Query:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLNR
        W  PP + W LN DASWS+    GGIGWI+     +IVLAGN  +     +  LE   I+ GL+ + N+    P+++E+DS EV  L+ +
Subjt:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLNR

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]2.3e-0634.44Show/hide
Query:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLNR
        W PP  H+W LN DA+W DS H GG+GWI+R  +   ++A          +K L  S  LE        G+   + +E+D  EV +++N+
Subjt:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLNR

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.1e-4396.67Show/hide
Query:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLNR
        WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWD DIVLAGNRFVEACNNVKLLEASAILEGLR+LTNLGVL PLHIETDSAEVESLLNR
Subjt:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLNR

XP_038886170.1 uncharacterized protein LOC120076417 [Benincasa hispida]5.2e-0636.67Show/hide
Query:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDS-AEVESLLN
        W P     W LN DASW+      G+GW+       + +AG +FV  C  V +LEA AI  GL  L+++ + + + +E+D   EV +LLN
Subjt:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDS-AEVESLLN

TrEMBL top hitse value%identityAlignment
A0A3P6GJZ4 RNase H domain-containing protein (Fragment)3.3e-0632.58Show/hide
Query:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLN
        W PPP +    N+D++W +     G+GWI R+   +++ AG R V    +  L EA A+  G  +L N G  + +  ETDS ++  ++N
Subjt:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLN

A0A5B6YN15 RNase H domain-containing protein (Fragment)8.6e-0733.33Show/hide
Query:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEV
        W PPP  ++ LN DASW      GG+G +IR W  D++    + ++ C++    E    L GL     +G+ H L +E D  +V
Subjt:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEV

A0A6J1CQG0 uncharacterized protein LOC1110132165.8e-1140Show/hide
Query:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLNR
        W  PP + W LN DASWS+    GGIGWI+     +IVLAGN  +     +  LE   I+ GL+ + N+    P+++E+DS EV  L+ +
Subjt:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLNR

A0A6J1D4B6 uncharacterized protein LOC1110171811.1e-0634.44Show/hide
Query:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLNR
        W PP  H+W LN DA+W DS H GG+GWI+R  +   ++A          +K L  S  LE        G+   + +E+D  EV +++N+
Subjt:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLNR

A0A6J1DNV9 uncharacterized protein LOC1110224035.2e-4496.67Show/hide
Query:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLNR
        WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWD DIVLAGNRFVEACNNVKLLEASAILEGLR+LTNLGVL PLHIETDSAEVESLLNR
Subjt:  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLNR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGGAACCCCCACCAATGCATATCTGGACCCTAAATGCCGATGCATCGTGGTCGGATTCTACGCATAGAGGAGGGATTGGGTGGATTATTCGCAGTTGGGACGACGACAT
TGTACTTGCGGGCAATCGTTTTGTGGAGGCATGCAATAATGTCAAACTTCTAGAGGCTTCGGCCATTCTTGAAGGTCTTCGCAGCTTGACAAATCTTGGAGTTCTTCACC
CTCTTCATATTGAGACAGATTCTGCCGAAGTGGAAAGTTTGCTGAATAGG
mRNA sequenceShow/hide mRNA sequence
TGGGAACCCCCACCAATGCATATCTGGACCCTAAATGCCGATGCATCGTGGTCGGATTCTACGCATAGAGGAGGGATTGGGTGGATTATTCGCAGTTGGGACGACGACAT
TGTACTTGCGGGCAATCGTTTTGTGGAGGCATGCAATAATGTCAAACTTCTAGAGGCTTCGGCCATTCTTGAAGGTCTTCGCAGCTTGACAAATCTTGGAGTTCTTCACC
CTCTTCATATTGAGACAGATTCTGCCGAAGTGGAAAGTTTGCTGAATAGG
Protein sequenceShow/hide protein sequence
WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDDDIVLAGNRFVEACNNVKLLEASAILEGLRSLTNLGVLHPLHIETDSAEVESLLNR