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MS018993 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018993
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold20:524057..524356
RNA-Seq ExpressionMS018993
SyntenyMS018993
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5458622.1 hypothetical protein F2P56_022639, partial [Juglans regia]9.1e-2045.63Show/hide
Query:  SIGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVPGDAD----QLQYGAWLR
        ++G  +G+   +D D+ G+CWG  ++++V ID+ KPL RG +L LG+   + WIP  YE+LPNFCY CGK+ HV   CD+   G A       QYGAWLR
Subjt:  SIGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVPGDAD----QLQYGAWLR

Query:  ELP
          P
Subjt:  ELP

OQU92454.1 hypothetical protein SORBI_3001G347001 [Sorghum bicolor]8.2e-2150Show/hide
Query:  IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVPGDADQLQYGAWLRELP
        +GN IG+   +D ++DG   G  ++IKV ID+ KPL RG+LL+     D+ W PI YE LPNFCYGCG L HV KECD  V  +    Q+G WLR  P
Subjt:  IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVPGDADQLQYGAWLRELP

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]3.1e-2046.88Show/hide
Query:  IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKEC-DEHVPGDADQLQYGAWLR
        +GN IG +E ++ + +  CWG  ++++V  DV+KPL RG+ L L       WIPI YE+LP+F Y CG+LDH+LK+C D  V   +  LQYG WLR
Subjt:  IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKEC-DEHVPGDADQLQYGAWLR

XP_028122006.1 uncharacterized protein LOC114319195 [Camellia sinensis]1.8e-2047.47Show/hide
Query:  IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVP----GDADQLQYGAWLR
        +GN +G++  +D ++ G+ WG+TM+I+VA+DV KPLRRG+ L L S A+  W+   YE+LP +CY CG+L H  +ECD+ +        D LQYGAWLR
Subjt:  IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVP----GDADQLQYGAWLR

XP_028124075.1 uncharacterized protein LOC114321128 [Camellia sinensis]6.3e-2149.49Show/hide
Query:  IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVP----GDADQLQYGAWLR
        +GN +G++  +D ++ G+ WG+TM+I+VAIDV KPLRRG+ L L S AD  W+   YE+LP +CY CG+L H  +ECD+ +        D LQYGAWLR
Subjt:  IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVP----GDADQLQYGAWLR

TrEMBL top hitse value%identityAlignment
A0A1Z5S941 CCHC-type domain-containing protein4.0e-2150Show/hide
Query:  IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVPGDADQLQYGAWLRELP
        +GN IG+   +D ++DG   G  ++IKV ID+ KPL RG+LL+     D+ W PI YE LPNFCYGCG L HV KECD  V  +    Q+G WLR  P
Subjt:  IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVPGDADQLQYGAWLRELP

A0A2I4E2H1 uncharacterized protein LOC1089856679.8e-2045.63Show/hide
Query:  SIGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVPGDAD----QLQYGAWLR
        ++G  +G+   +D D+ G+CWG  ++++V ID+ KPL RG  L LG+   + WIP  YE+LPNFCY CGK+ HV   CD+   G A       QYGAWLR
Subjt:  SIGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVPGDAD----QLQYGAWLR

Query:  ELP
          P
Subjt:  ELP

A0A6J1BSZ1 uncharacterized protein LOC1110054811.5e-2046.88Show/hide
Query:  IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKEC-DEHVPGDADQLQYGAWLR
        +GN IG +E ++ + +  CWG  ++++V  DV+KPL RG+ L L       WIPI YE+LP+F Y CG+LDH+LK+C D  V   +  LQYG WLR
Subjt:  IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKEC-DEHVPGDADQLQYGAWLR

A0A6P9E3M1 uncharacterized protein LOC1183448029.8e-2045.63Show/hide
Query:  SIGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVPGDAD----QLQYGAWLR
        ++G  +G+   +D D+ G+CWG  ++++V ID+ KPL RG  L LG+   + WIP  YE+LPNFCY CGK+ HV   CD+   G A       QYGAWLR
Subjt:  SIGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVPGDAD----QLQYGAWLR

Query:  ELP
          P
Subjt:  ELP

A0A6P9EBQ9 uncharacterized protein LOC1183442001.7e-1945.63Show/hide
Query:  SIGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVPGDAD----QLQYGAWLR
        ++G  +G+   +D D  G+CWG  +++ V ID+ KPL RG  L LG+   + WIP  YE+LPNFCY CGK+ HV   CD+   G A       QYGAWLR
Subjt:  SIGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVPGDAD----QLQYGAWLR

Query:  ELP
          P
Subjt:  ELP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCAATAGGGAATTTAATTGGGAAATATGAAAAAATTGATTGTGATGAAGACGGTCTTTGTTGGGGCCAGACAATGAAAATTAAGGTGGCCATTGATGTGTTAAAACCGCT
TCGTAGGGGTGTTCTTCTTAAGCTCGGATCAATGGCGGATGAGAGATGGATCCCCATCACGTATGAAAAACTTCCGAATTTCTGTTACGGATGCGGTAAGCTGGACCATG
TGTTAAAGGAGTGCGATGAGCATGTACCAGGCGATGCTGATCAGCTCCAATATGGAGCGTGGCTGAGGGAGTTGCCATTT
mRNA sequenceShow/hide mRNA sequence
TCAATAGGGAATTTAATTGGGAAATATGAAAAAATTGATTGTGATGAAGACGGTCTTTGTTGGGGCCAGACAATGAAAATTAAGGTGGCCATTGATGTGTTAAAACCGCT
TCGTAGGGGTGTTCTTCTTAAGCTCGGATCAATGGCGGATGAGAGATGGATCCCCATCACGTATGAAAAACTTCCGAATTTCTGTTACGGATGCGGTAAGCTGGACCATG
TGTTAAAGGAGTGCGATGAGCATGTACCAGGCGATGCTGATCAGCTCCAATATGGAGCGTGGCTGAGGGAGTTGCCATTT
Protein sequenceShow/hide protein sequence
SIGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVPGDADQLQYGAWLRELPF