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MS018997 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018997
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionrRNA adenine N(6)-methyltransferase
Genome locationscaffold20:544868..545164
RNA-Seq ExpressionMS018997
SyntenyMS018997
Gene Ontology termsGO:0000154 - rRNA modification (biological process)
GO:0032259 - methylation (biological process)
GO:0008649 - rRNA methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035148.1 uncharacterized protein E6C27_scaffold57G002390 [Cucumis melo var. makuwa]1.9e-3381.44Show/hide
Query:  LSDTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT
        L D+MDA A++DI  RPRVK SF LGSE HLVNTANKGTLSEQL+SMKE+SMAILKEYITKHNVPNDVPDEL EE SEDDDEI EKPQVK+KK+K+T
Subjt:  LSDTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT

KAG6606942.1 putative E3 ubiquitin ligase SUD1, partial [Cucurbita argyrosperma subsp. sororia]3.5e-3284.38Show/hide
Query:  DTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSE-DDDEIPEKPQVKSKKSKLT
        D+MDA+AQ+ IS  PRVKASF LGSE HLVNTANKGTLSEQL+SMKEESMAILKEYITKHNVPNDVPDEL EE SE DDDE  EKPQVKSKK+KLT
Subjt:  DTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSE-DDDEIPEKPQVKSKKSKLT

KAG7036645.1 hypothetical protein SDJN02_00265, partial [Cucurbita argyrosperma subsp. argyrosperma]3.5e-3284.38Show/hide
Query:  DTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSE-DDDEIPEKPQVKSKKSKLT
        D+MDA+AQ+ IS  PRVKASF LGSE HLVNTANKGTLSEQL+SMKEESMAILKEYITKHNVPNDVPDEL EE SE DDDE  EKPQVKSKK+KLT
Subjt:  DTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSE-DDDEIPEKPQVKSKKSKLT

TYK29223.1 uncharacterized protein E5676_scaffold1228G00090 [Cucumis melo var. makuwa]2.1e-3282.8Show/hide
Query:  MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT
        MDA A++DI  RPRVK SF LGSE HLVNTANKGTLSEQL+SMKE+SMAILKEYITKHNVPNDVPDEL EE SEDDDEI EKPQVK+KK+K+T
Subjt:  MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT

XP_008443784.1 PREDICTED: uncharacterized protein LOC103487289 [Cucumis melo]1.9e-3381.44Show/hide
Query:  LSDTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT
        L D+MDA A++DI  RPRVK SF LGSE HLVNTANKGTLSEQL+SMKE+SMAILKEYITKHNVPNDVPDEL EE SEDDDEI EKPQVK+KK+K+T
Subjt:  LSDTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT

TrEMBL top hitse value%identityAlignment
A0A0A0M0V3 Uncharacterized protein2.2e-3282.8Show/hide
Query:  MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT
        MDA A++DI  RPRVK S  LGSETHLVNTANKGTLSEQL SMKE+SMAILKEYITKHNVPNDVPDEL EE SEDDDEI EKPQVK+KK+K+T
Subjt:  MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT

A0A1S3B8U1 uncharacterized protein LOC1034872899.1e-3481.44Show/hide
Query:  LSDTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT
        L D+MDA A++DI  RPRVK SF LGSE HLVNTANKGTLSEQL+SMKE+SMAILKEYITKHNVPNDVPDEL EE SEDDDEI EKPQVK+KK+K+T
Subjt:  LSDTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT

A0A5A7SX16 Uncharacterized protein9.1e-3481.44Show/hide
Query:  LSDTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT
        L D+MDA A++DI  RPRVK SF LGSE HLVNTANKGTLSEQL+SMKE+SMAILKEYITKHNVPNDVPDEL EE SEDDDEI EKPQVK+KK+K+T
Subjt:  LSDTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT

A0A5D3DZN8 Uncharacterized protein1.0e-3282.8Show/hide
Query:  MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT
        MDA A++DI  RPRVK SF LGSE HLVNTANKGTLSEQL+SMKE+SMAILKEYITKHNVPNDVPDEL EE SEDDDEI EKPQVK+KK+K+T
Subjt:  MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT

A0A6J1G9M3 uncharacterized protein LOC1114520658.5e-3285.11Show/hide
Query:  MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSE-DDDEIPEKPQVKSKKSKLT
        MDA+AQ+ IS  PRVKASF LGSE HLVNTANKGTLSEQL+SMKEESMAILKEYITKHNVPNDVPDEL EE SE DDDE  EKPQVKSKK+KLT
Subjt:  MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSE-DDDEIPEKPQVKSKKSKLT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G47820.1 unknown protein1.5e-1243.16Show/hide
Query:  MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVP-NDVPDELAEEVSEDDDE------IPEKPQVKSK
        M+ E+   +  +  VK  F LG+E++ +++    T+ +QLVSMKEESM ILK++ITKHNVP +DVPD++  +  E DD+       P KP  K+K
Subjt:  MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVP-NDVPDELAEEVSEDDDE------IPEKPQVKSK

AT1G47820.2 unknown protein1.5e-1243.16Show/hide
Query:  MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVP-NDVPDELAEEVSEDDDE------IPEKPQVKSK
        M+ E+   +  +  VK  F LG+E++ +++    T+ +QLVSMKEESM ILK++ITKHNVP +DVPD++  +  E DD+       P KP  K+K
Subjt:  MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVP-NDVPDELAEEVSEDDDE------IPEKPQVKSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTACCCTTTCAGATACAATGGATGCTGAAGCTCAAGACGATATTTCTCCGAGGCCTCGGGTTAAAGCCTCATTTTACCTAGGGTCAGAGACACATTTGGTCAATACAGC
TAATAAAGGCACTCTCTCAGAGCAGTTGGTTTCTATGAAAGAGGAGAGCATGGCTATTTTGAAGGAGTACATAACCAAACATAATGTTCCTAACGATGTGCCGGACGAAC
TAGCTGAAGAAGTTTCCGAGGACGACGACGAGATCCCCGAAAAGCCTCAAGTGAAGTCAAAGAAGTCTAAATTAACA
mRNA sequenceShow/hide mRNA sequence
TTTACCCTTTCAGATACAATGGATGCTGAAGCTCAAGACGATATTTCTCCGAGGCCTCGGGTTAAAGCCTCATTTTACCTAGGGTCAGAGACACATTTGGTCAATACAGC
TAATAAAGGCACTCTCTCAGAGCAGTTGGTTTCTATGAAAGAGGAGAGCATGGCTATTTTGAAGGAGTACATAACCAAACATAATGTTCCTAACGATGTGCCGGACGAAC
TAGCTGAAGAAGTTTCCGAGGACGACGACGAGATCCCCGAAAAGCCTCAAGTGAAGTCAAAGAAGTCTAAATTAACA
Protein sequenceShow/hide protein sequence
FTLSDTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT