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MS019010 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019010
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold20:674247..674546
RNA-Seq ExpressionMS019010
SyntenyMS019010
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0743320.1 hypothetical protein [Gossypium gossypioides]4.4e-0633.73Show/hide
Query:  LEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATY
        ++ ++F A S F  +EVE DSL  I+ ++N +  +     +++  + L   F    F H+SRQ NR AH L+K G+   + TY
Subjt:  LEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATY

XP_018818291.2 uncharacterized protein LOC108989209 [Juglans regia]2.6e-0640.23Show/hide
Query:  PLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAK--WGI
        P+  E+  IL GL+F      +HL +ESDSLL +  ++++  +R  + N V +I+ L   F   S  H+SR  N AAHGLAK  W I
Subjt:  PLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAK--WGI

XP_018822505.1 uncharacterized protein LOC108992400 [Juglans regia]7.5e-0640.23Show/hide
Query:  PLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAK--WGI
        P+  E+  IL GL+F      +HL +ESDSLL +  ++++  +R    N V +I+ L   F   S  H+SR  N AAHGLAK  W I
Subjt:  PLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAK--WGI

XP_021727655.1 uncharacterized protein LOC110694792 [Chenopodium quinoa]2.2e-0537.35Show/hide
Query:  SPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAK
        SPL AE + I+ GL  A  +    LEVESD L  +++++  +  +   Q  V++  +LT  F + SF+   R CN+AAH +AK
Subjt:  SPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAK

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]6.5e-50100Show/hide
Query:  LSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNF
        LSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNF
Subjt:  LSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNF

TrEMBL top hitse value%identityAlignment
A0A1U8NYQ0 uncharacterized protein LOC1079523604.0e-0534.38Show/hide
Query:  LAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNF
        +AE     +GL FA  + FT +EVE DS   I+ I  E   R D  + +++I+++   F  + F H  R+ NR AH +A+ GI     T+ W+ +F
Subjt:  LAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNF

A0A2I4EFW5 uncharacterized protein LOC1089892091.2e-0640.23Show/hide
Query:  PLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAK--WGI
        P+  E+  IL GL+F      +HL +ESDSLL +  ++++  +R  + N V +I+ L   F   S  H+SR  N AAHGLAK  W I
Subjt:  PLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAK--WGI

A0A2I4ESY4 uncharacterized protein LOC1089924003.6e-0640.23Show/hide
Query:  PLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAK--WGI
        P+  E+  IL GL+F      +HL +ESDSLL +  ++++  +R    N V +I+ L   F   S  H+SR  N AAHGLAK  W I
Subjt:  PLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAK--WGI

A0A6J1DX30 uncharacterized protein LOC1110248743.1e-50100Show/hide
Query:  LSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNF
        LSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNF
Subjt:  LSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNF

A0A7J9C4B9 RNase H domain-containing protein2.1e-0633.73Show/hide
Query:  LEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATY
        ++ ++F A S F  +EVE DSL  I+ ++N +  +     +++  + L   F    F H+SRQ NR AH L+K G+   + TY
Subjt:  LEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGTCGCCTCTTCTTGCAGAAATCAGATGCATCTTGGAGGGTCTGAAATTTGCAGCTGCTTCAAATTTCACCCATTTAGAAGTCGAATCTGATTCTTTGTTGGCAATTCA
ATTGATTCGAAATGAGATACACACAAGGGGAGATGAGCAAAATTGGGTGATGGAGATTCAAGCCCTAACCTGCTGCTTTGCCTTCATTTCCTTTTCCCATTCGTCCCGTC
AATGCAATCGTGCTGCCCATGGTTTAGCAAAATGGGGGATCACTTCCCCTTCTGCCACATATGCTTGGCTGTTTAATTTC
mRNA sequenceShow/hide mRNA sequence
TTGTCGCCTCTTCTTGCAGAAATCAGATGCATCTTGGAGGGTCTGAAATTTGCAGCTGCTTCAAATTTCACCCATTTAGAAGTCGAATCTGATTCTTTGTTGGCAATTCA
ATTGATTCGAAATGAGATACACACAAGGGGAGATGAGCAAAATTGGGTGATGGAGATTCAAGCCCTAACCTGCTGCTTTGCCTTCATTTCCTTTTCCCATTCGTCCCGTC
AATGCAATCGTGCTGCCCATGGTTTAGCAAAATGGGGGATCACTTCCCCTTCTGCCACATATGCTTGGCTGTTTAATTTC
Protein sequenceShow/hide protein sequence
LSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNF