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MS019014 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019014
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold20:706190..706459
RNA-Seq ExpressionMS019014
SyntenyMS019014
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6693248.1 hypothetical protein I3842_10G159900, partial [Carya illinoinensis]6.1e-0738.89Show/hide
Query:  WRPPPLGCVVKMNTDAAVSTE--GSGVGVLLRDGNAE-IVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLIGD
        W PPP+GC +K+N D A  ++   +GVGV+LRD N + +VAA      V + +  E +A+  GL+L  + GV ++++ESDSL  +N + +
Subjt:  WRPPPLGCVVKMNTDAAVSTE--GSGVGVLLRDGNAE-IVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLIGD

KAG6693249.1 hypothetical protein I3842_10G159900 [Carya illinoinensis]6.1e-0738.89Show/hide
Query:  WRPPPLGCVVKMNTDAAVSTE--GSGVGVLLRDGNAE-IVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLIGD
        W PPP+GC +K+N D A  ++   +GVGV+LRD N + +VAA      V + +  E +A+  GL+L  + GV ++++ESDSL  +N + +
Subjt:  WRPPPLGCVVKMNTDAAVSTE--GSGVGVLLRDGNAE-IVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLIGD

XP_022155289.1 uncharacterized protein LOC111022426 [Momordica charantia]4.9e-4198.89Show/hide
Query:  NAWRPPPLGCVVKMNTDAAVSTEGSGVGVLLRDGNAEIVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLIGDK
        NAWRPPPLGCVVKMNTDAAVSTEGSGVGVLLRDGNAEIVAAM+DFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLIGDK
Subjt:  NAWRPPPLGCVVKMNTDAAVSTEGSGVGVLLRDGNAEIVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLIGDK

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]1.9e-3286.67Show/hide
Query:  NAWRPPPLGCVVKMNTDAAVSTEGSGVGVLLRDGNAEIVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLIGDK
        N WR PPLG VVKMNTDAAVS EGSGVGVLLR+GNAEIV AMVDFH+VKTPLL +ILAIREGL LATRLGVHRV+VE+DSLEALNLIGDK
Subjt:  NAWRPPPLGCVVKMNTDAAVSTEGSGVGVLLRDGNAEIVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLIGDK

XP_042939527.1 uncharacterized protein LOC122274566 [Carya illinoinensis]4.7e-0744.32Show/hide
Query:  WRPPPLGCVVKMNTDAAVSTEGS--GVGVLLRDGNAEIVAAMVDFH-VVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLI
        WRPPP G V+K+NTD A+  E    GVGV+LRD N ++V A  +       P+  E+LAI  GL+L   +G++ ++VE DSL ++N I
Subjt:  WRPPPLGCVVKMNTDAAVSTEGS--GVGVLLRDGNAEIVAAMVDFH-VVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLI

TrEMBL top hitse value%identityAlignment
A0A6J1CK80 uncharacterized protein LOC1110120473.9e-0752.94Show/hide
Query:  WRPPPLGCVVKMNTDAA--VSTEGSGVGVLLRDGNAEIVAAMVDFHVVKTPLLTEILAIREGLRLATR
        W+PP  G  VK+N DAA  V  +  GVGVL+RD    I+AA++  H V +PLL EI AIRE +RLA R
Subjt:  WRPPPLGCVVKMNTDAA--VSTEGSGVGVLLRDGNAEIVAAMVDFHVVKTPLLTEILAIREGLRLATR

A0A6J1DPU1 uncharacterized protein LOC1110224262.4e-4198.89Show/hide
Query:  NAWRPPPLGCVVKMNTDAAVSTEGSGVGVLLRDGNAEIVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLIGDK
        NAWRPPPLGCVVKMNTDAAVSTEGSGVGVLLRDGNAEIVAAM+DFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLIGDK
Subjt:  NAWRPPPLGCVVKMNTDAAVSTEGSGVGVLLRDGNAEIVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLIGDK

A0A6J1DZK3 uncharacterized protein LOC1110249689.1e-3386.67Show/hide
Query:  NAWRPPPLGCVVKMNTDAAVSTEGSGVGVLLRDGNAEIVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLIGDK
        N WR PPLG VVKMNTDAAVS EGSGVGVLLR+GNAEIV AMVDFH+VKTPLL +ILAIREGL LATRLGVHRV+VE+DSLEALNLIGDK
Subjt:  NAWRPPPLGCVVKMNTDAAVSTEGSGVGVLLRDGNAEIVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLIGDK

A0A7J6WZQ1 RNase H domain-containing protein3.9e-0732.56Show/hide
Query:  AWRPPPLGCVVKMNTDAAVSTEGSGVGVLLRDGNAEIVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLI
        +W PPP G  + +NTD A+  +G+G   +LR+   +++ A    H   + L  E++A+  GL LA  +G+ R+MV++DS++   ++
Subjt:  AWRPPPLGCVVKMNTDAAVSTEGSGVGVLLRDGNAEIVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLI

M8ARB3 Casein kinase I-2-like protein6.0e-0846.59Show/hide
Query:  NAWRPPPLGCVVKMNTDAAV--STEGSGVGVLLRDGNAEIVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNL
        + WRPP LG  VK+NTDAAV  S E SG G + R  NA + A     H V  P++ E LA+R+G+  A   G  +VM+E+D LE +NL
Subjt:  NAWRPPPLGCVVKMNTDAAV--STEGSGVGVLLRDGNAEIVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATGCATGGAGGCCTCCTCCCCTGGGGTGTGTGGTGAAGATGAACACGGATGCGGCTGTGTCGACAGAGGGATCGGGTGTTGGTGTTCTGCTTCGTGACGGAAATGCGGA
GATTGTGGCGGCCATGGTTGATTTTCATGTGGTGAAGACTCCTCTACTGACTGAAATTTTGGCAATCAGGGAAGGTTTGAGGCTGGCAACAAGGTTGGGGGTCCATCGAG
TCATGGTGGAGTCGGATTCACTTGAAGCCCTAAATTTAATTGGGGACAAA
mRNA sequenceShow/hide mRNA sequence
AATGCATGGAGGCCTCCTCCCCTGGGGTGTGTGGTGAAGATGAACACGGATGCGGCTGTGTCGACAGAGGGATCGGGTGTTGGTGTTCTGCTTCGTGACGGAAATGCGGA
GATTGTGGCGGCCATGGTTGATTTTCATGTGGTGAAGACTCCTCTACTGACTGAAATTTTGGCAATCAGGGAAGGTTTGAGGCTGGCAACAAGGTTGGGGGTCCATCGAG
TCATGGTGGAGTCGGATTCACTTGAAGCCCTAAATTTAATTGGGGACAAA
Protein sequenceShow/hide protein sequence
NAWRPPPLGCVVKMNTDAAVSTEGSGVGVLLRDGNAEIVAAMVDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLIGDK