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MS019023 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019023
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsyntaxin-41-like
Genome locationscaffold20:800219..800425
RNA-Seq ExpressionMS019023
SyntenyMS019023
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006906 - vesicle fusion (biological process)
GO:0048278 - vesicle docking (biological process)
GO:0012505 - endomembrane system (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031201 - SNARE complex (cellular component)
GO:0000149 - SNARE binding (molecular function)
GO:0005484 - SNAP receptor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586234.1 Syntaxin-43, partial [Cucurbita argyrosperma subsp. sororia]5.7e-2182.61Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS
        MASRN+TL+FRKYRDALRSV APTSSSP   SP TSSG GGPVIELVSS LL+PN++YAPLSTEDPGNS
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS

KAG7030133.1 Syntaxin-43, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-2081.16Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS
        MASRN+TL+FRKYRDALRSV  PT SSP S SP TSSG GGPVIELVSS LL+PN++YAPLSTEDPGNS
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS

XP_022156434.1 syntaxin-41-like [Momordica charantia]6.1e-2386.96Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS
        MASRN+TLLFRKYRDALRSV APTSSSP+S SP TSSG GGPVIELVSS LL+PN+TYAPLSTEDPGNS
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS

XP_022937577.1 syntaxin-41-like [Cucurbita moschata]5.7e-2182.61Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS
        MASRN+TL+FRKYRDALRSV APTSSSP   SP TSSG GGPVIELVSS LL+PN++YAPLSTEDPGNS
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS

XP_023537590.1 syntaxin-41-like [Cucurbita pepo subsp. pepo]5.7e-2182.61Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS
        MASRN+TL+FRKYRDALRSV APTSSSP   SP TSSG GGPVIELVSS LL+PN++YAPLSTEDPGNS
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS

TrEMBL top hitse value%identityAlignment
A0A0A0LLY7 t-SNARE coiled-coil homology domain-containing protein8.0e-2181.16Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS
        MASRN+TLLF+KYRDALRSV  PTSSSP   SP TSS GGGPVIELVSS LL+PN++YAPLSTEDPGNS
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS

A0A6J1DTG3 syntaxin-41-like2.9e-2386.96Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS
        MASRN+TLLFRKYRDALRSV APTSSSP+S SP TSSG GGPVIELVSS LL+PN+TYAPLSTEDPGNS
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS

A0A6J1FBL2 syntaxin-41-like2.8e-2182.61Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS
        MASRN+TL+FRKYRDALRSV APTSSSP   SP TSSG GGPVIELVSS LL+PN++YAPLSTEDPGNS
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS

A0A6J1G576 syntaxin-43-like6.1e-2181.16Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS
        MASRN+TL+FRKYRDALRSV  PT SSP S SP TSSG GGPVIELVSS LL+PN++YAPLSTEDPGNS
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS

A0A6J1KJM9 syntaxin-43-like6.1e-2181.16Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS
        MASRN+TL+FRKYRDALRSV  PT SSP S SP TSSG GGPVIELVSS LL+PN++YAPLSTEDPGNS
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS

SwissProt top hitse value%identityAlignment
O65359 Syntaxin-416.8e-1766.67Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS
        MA+RN+TLLFRKYR++LRSV AP SSS ++    T SGG GPVIE+ S+ LLNPN++YAP+STEDPG S
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS

Q9SUJ1 Syntaxin-432.2e-1562.16Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPIST-----SPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS
        MA+RN+TLLFRKYR++LRSV AP  SS  ST     S   +  G GPVIE+ S+ LLNPN++YAP+STEDPGNS
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPIST-----SPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS

Q9SWH4 Syntaxin-428.3e-0747.14Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPN-QTYAPLSTEDPGNS
        MA+RN+T ++RK+RDA +S  AP S S        S   GGPVIE+VS      N  +YAPL++ DPG S
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPN-QTYAPLSTEDPGNS

Arabidopsis top hitse value%identityAlignment
AT3G05710.1 syntaxin of plants 431.5e-1662.16Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPIST-----SPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS
        MA+RN+TLLFRKYR++LRSV AP  SS  ST     S   +  G GPVIE+ S+ LLNPN++YAP+STEDPGNS
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPIST-----SPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS

AT3G05710.2 syntaxin of plants 431.5e-1662.16Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPIST-----SPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS
        MA+RN+TLLFRKYR++LRSV AP  SS  ST     S   +  G GPVIE+ S+ LLNPN++YAP+STEDPGNS
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPIST-----SPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS

AT4G02195.1 syntaxin of plants 425.9e-0847.14Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPN-QTYAPLSTEDPGNS
        MA+RN+T ++RK+RDA +S  AP S S        S   GGPVIE+VS      N  +YAPL++ DPG S
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPN-QTYAPLSTEDPGNS

AT5G26980.1 syntaxin of plants 414.8e-1866.67Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS
        MA+RN+TLLFRKYR++LRSV AP SSS ++    T SGG GPVIE+ S+ LLNPN++YAP+STEDPG S
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS

AT5G26980.2 syntaxin of plants 414.8e-1866.67Show/hide
Query:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS
        MA+RN+TLLFRKYR++LRSV AP SSS ++    T SGG GPVIE+ S+ LLNPN++YAP+STEDPG S
Subjt:  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGAGGAATCAAACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGTGGGCTCCTACCAGCTCTTCTCCAATTTCGACATCGCCACCGACTAGTTC
TGGCGGTGGTGGTCCGGTGATTGAATTGGTGAGCTCGTTGTTGCTGAATCCGAATCAAACTTATGCTCCCTTGAGTACTGAGGATCCGGGTAATTCA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGAGGAATCAAACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGTGGGCTCCTACCAGCTCTTCTCCAATTTCGACATCGCCACCGACTAGTTC
TGGCGGTGGTGGTCCGGTGATTGAATTGGTGAGCTCGTTGTTGCTGAATCCGAATCAAACTTATGCTCCCTTGAGTACTGAGGATCCGGGTAATTCA
Protein sequenceShow/hide protein sequence
MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS