CuGenDBv2

Gene ID	MS019055
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	scaffold20:1034666..1038864
RNA-Seq Expression	MS019055
Synteny	MS019055
Gene Ontology terms	GO:0010270 - photosystem II oxygen evolving complex assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152258.2 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus]

1.3e-222

90.43

Show/hide

Query:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF
        MA+ATLPL+HHL   SNPKS T LRPRLPTS     + F LSI  CSSTSQSPEAN+++AESCVN GLQLFSKGRVKEALVQF+AALN+DPNP+EAQAA 
Subjt:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF

Query:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL
        YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVRKFFY+ALSAAAGISL
Subjt:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL

Query:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
        LF IPRLFRAIQGGD APDVWETAGNLAVN+GGIIV VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
Subjt:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ

Query:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTN-ATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDV
        KAERFRTELLRRGVLLVPV+WGEGREPQIEK+GFGAPT  A A LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIR+QQ+SEGVTPGEDV
Subjt:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTN-ATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDV

Query:  YIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        YIILRLDGRVRRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  YIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

XP_008454363.1 PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis melo]

2.1e-225

90.87

Show/hide

Query:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF
        MA+ATLPL+HHL   SNPKS T LRPRLPTS     + FHLSI  CSSTSQSPEAN+++AESCVNLGLQLFSKGRVKEALVQF+AALN+DPNP+EAQAAF
Subjt:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF

Query:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL
        YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFY+ALSAAAGISL
Subjt:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL

Query:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
        LF IPRLFRAIQGGD APDVWETAGNLAVN+GGIIV VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
Subjt:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ

Query:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVY
        KAERFRTELLRRGVLLVPV+WGEGREPQIEK+GFGAP  A   LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSEGVTPGEDVY
Subjt:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVY

Query:  IILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        IILRLDGR+RRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  IILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

XP_022143429.1 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Momordica charantia]

1.1e-247

99.77

Show/hide

Query:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF
        MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF
Subjt:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF

Query:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL
        YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFY+ALSAAAGISL
Subjt:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL

Query:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
        LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
Subjt:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ

Query:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVY
        KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVY
Subjt:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVY

Query:  IILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        IILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
Subjt:  IILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

XP_023528576.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo]

3.5e-217

87.7

Show/hide

Query:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF
        + +ATLP++H LL  SNPKS T LR RLPTS  N  + FH+SI  CSSTSQSPEAN+E+AES VNLGLQLFSKGRVKEALVQF+AAL+++PNPLEAQAA 
Subjt:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF

Query:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL
        YNKACCHAYRGEGKKAADCLRVALREY+LKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFY+ALSAAAGISL
Subjt:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL

Query:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
        LF +PRLFRAIQGG+EAPDVWET GNLAVN+GGI+V VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQ
Subjt:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ

Query:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNA-TAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDV
        KAERFRTELLRRGVLLVPV+W EGREP++EK+GFGAP  A +A LPSIGEDFEKRAQSITAKSKLKAEIRFRA+V+SPAEWESWIRDQQKSEGVTPGEDV
Subjt:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNA-TAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDV

Query:  YIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        YIILRLDGRVRRSGRGMPDW KIIEELPPM+ALLSKLER
Subjt:  YIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

XP_038905239.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]

2.4e-221

90.18

Show/hide

Query:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF
        MA+ATLPL+HHLL FS+PKS T LRPRL TS     + FH+SI   SSTSQSPEAN+E+AESCVNLGLQLFSKGRVKEALVQF+AALN+DPNP+EAQAA 
Subjt:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF

Query:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL
        YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FF +ALSAAAGISL
Subjt:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL

Query:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
        LF IPRLFRAIQGGD APDVWETAGNLAVN+GGI+V VALFLWDNKKEEEQL+QISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
Subjt:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ

Query:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVY
        KAERFRTELLRRGVLLVPV+WGEGREPQIEK+GFGAP    A LPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSE VTPGEDVY
Subjt:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVY

Query:  IILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        IILRLDGRVRRSGRGMPDW KIIEELPPMEALLSKLER
Subjt:  IILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT96 TPR_REGION domain-containing protein

6.1e-223

90.43

Show/hide

Query:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF
        MA+ATLPL+HHL   SNPKS T LRPRLPTS     + F LSI  CSSTSQSPEAN+++AESCVN GLQLFSKGRVKEALVQF+AALN+DPNP+EAQAA 
Subjt:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF

Query:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL
        YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVRKFFY+ALSAAAGISL
Subjt:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL

Query:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
        LF IPRLFRAIQGGD APDVWETAGNLAVN+GGIIV VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
Subjt:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ

Query:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTN-ATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDV
        KAERFRTELLRRGVLLVPV+WGEGREPQIEK+GFGAPT  A A LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIR+QQ+SEGVTPGEDV
Subjt:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTN-ATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDV

Query:  YIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        YIILRLDGRVRRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  YIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

A0A1S3BYE8 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

1.0e-225

90.87

Show/hide

Query:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF
        MA+ATLPL+HHL   SNPKS T LRPRLPTS     + FHLSI  CSSTSQSPEAN+++AESCVNLGLQLFSKGRVKEALVQF+AALN+DPNP+EAQAAF
Subjt:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF

Query:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL
        YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFY+ALSAAAGISL
Subjt:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL

Query:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
        LF IPRLFRAIQGGD APDVWETAGNLAVN+GGIIV VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
Subjt:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ

Query:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVY
        KAERFRTELLRRGVLLVPV+WGEGREPQIEK+GFGAP  A   LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSEGVTPGEDVY
Subjt:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVY

Query:  IILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        IILRLDGR+RRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  IILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

A0A5A7TR76 Protein LOW PSII ACCUMULATION 1

1.0e-225

90.87

Show/hide

Query:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF
        MA+ATLPL+HHL   SNPKS T LRPRLPTS     + FHLSI  CSSTSQSPEAN+++AESCVNLGLQLFSKGRVKEALVQF+AALN+DPNP+EAQAAF
Subjt:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF

Query:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL
        YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFY+ALSAAAGISL
Subjt:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL

Query:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
        LF IPRLFRAIQGGD APDVWETAGNLAVN+GGIIV VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
Subjt:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ

Query:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVY
        KAERFRTELLRRGVLLVPV+WGEGREPQIEK+GFGAP  A   LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSEGVTPGEDVY
Subjt:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVY

Query:  IILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        IILRLDGR+RRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  IILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

A0A6J1CPA1 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

5.4e-248

99.77

Show/hide

Query:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF
        MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF
Subjt:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF

Query:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL
        YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFY+ALSAAAGISL
Subjt:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL

Query:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
        LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
Subjt:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ

Query:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVY
        KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVY
Subjt:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVY

Query:  IILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        IILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
Subjt:  IILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

A0A6J1J7F4 protein LOW PSII ACCUMULATION 1, chloroplastic

1.7e-217

87.7

Show/hide

Query:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF
        + +ATLP++H LL  SNPKS T LR RLPTS  N  + FH+SI  CSSTSQSPE NVE+AES VNLGLQLFSKGRVKEALVQF+AAL+++PNP+EAQAA 
Subjt:  MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAF

Query:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL
        YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFY+ALSAAAGISL
Subjt:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISL

Query:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
        LF +PRLFRAIQGG+EAPDVWET GNLAVN+GGI+V VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQ
Subjt:  LFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ

Query:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNA-TAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDV
        KAERFRTELLRRGVLLVPV+W EGREP++EK+GFGAP  A +A LPSIGEDFEKRAQSITAKSKLKAEIRFRA+V+SPAEWESWIRDQQKSEGVTPGEDV
Subjt:  KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNA-TAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDV

Query:  YIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        YIILRLDGRVRRSGRGMPDW KIIEELPPM+ALLSKLER
Subjt:  YIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

5.2e-179

71.08

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Query:  MAVATLPLY--HHLLRFSNPKSRT-TLRPRLP---TSTFNFHKNFHLSIAFCSSTSQSPEANVE---------TAESCVNLGLQLFSKGRVKEALVQFDA
        MAVAT P    H   R SN  SR    RP LP    + FN  +N+   +   +S+S SP ++           TAE CVN GL LF +GRVK+ALVQF+ 
Subjt:  MAVATLPLY--HHLLRFSNPKSRT-TLRPRLP---TSTFNFHKNFHLSIAFCSSTSQSPEANVE---------TAESCVNLGLQLFSKGRVKEALVQFDA

Query:  ALNLDPNPLEAQAAFYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVR
        AL+L PNP+E+QAA+YNKACCHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEARLGGEDIG  FRRDLKLISEV+APFRGVR
Subjt:  ALNLDPNPLEAQAAFYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVR

Query:  KFFYIALSAAAGISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP
        KFFY A +AAAGIS+ FT+PRL +AI+GGD AP++ ET GN A+N+GGI+V+V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Subjt:  KFFYIALSAAAGISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP

Query:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIR
        VILAGKKETV+ A+QKA+RFRTELLRRGVLLVPVVWGE + P+IEK+GFGA + A   LPSIGEDF+ RAQS+ A+SKLK EIRF+AE VSP EWE WIR
Subjt:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIR

Query:  DQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        DQQ SEGV PG+DVYIILRLDGRVRRSGRGMPDW +I +ELPPM+ +LSKLER
Subjt:  DQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

3.7e-180

71.08

Show/hide

Query:  MAVATLPLY--HHLLRFSNPKSRT-TLRPRLP---TSTFNFHKNFHLSIAFCSSTSQSPEANVE---------TAESCVNLGLQLFSKGRVKEALVQFDA
        MAVAT P    H   R SN  SR    RP LP    + FN  +N+   +   +S+S SP ++           TAE CVN GL LF +GRVK+ALVQF+ 
Subjt:  MAVATLPLY--HHLLRFSNPKSRT-TLRPRLP---TSTFNFHKNFHLSIAFCSSTSQSPEANVE---------TAESCVNLGLQLFSKGRVKEALVQFDA

Query:  ALNLDPNPLEAQAAFYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVR
        AL+L PNP+E+QAA+YNKACCHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEARLGGEDIG  FRRDLKLISEV+APFRGVR
Subjt:  ALNLDPNPLEAQAAFYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVR

Query:  KFFYIALSAAAGISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP
        KFFY A +AAAGIS+ FT+PRL +AI+GGD AP++ ET GN A+N+GGI+V+V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Subjt:  KFFYIALSAAAGISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP

Query:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIR
        VILAGKKETV+ A+QKA+RFRTELLRRGVLLVPVVWGE + P+IEK+GFGA + A   LPSIGEDF+ RAQS+ A+SKLK EIRF+AE VSP EWE WIR
Subjt:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIR

Query:  DQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        DQQ SEGV PG+DVYIILRLDGRVRRSGRGMPDW +I +ELPPM+ +LSKLER
Subjt:  DQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

2.0e-32

30.97

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Query:  DLKLISEVQAPFRGVRKFFYIALSAAAGISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRL-
        D ++ SEV +PFR VR FFY+A  A+  +  L    RL  A+     + +V E    L V++G   +   L+  +NK +  Q+A++SR E L +L +R+ 
Subjt:  DLKLISEVQAPFRGVRKFFYIALSAAAGISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRL-

Query:  STNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEI
          N+++ +  LR   R VI AG  E +  A ++++ +   L+ RGV++V     +G  P +E        + T +     E+  +R + +          
Subjt:  STNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEI

Query:  RFRAEVVSPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKL
         +R   V   EWE W+ +Q+K   V+    VY+ LRLDGRVR SG G P W   + +LPP++ + + L
Subjt:  RFRAEVVSPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKL

Sequences

Show/hide sequences

CDS sequence

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ATGGCTGTGGCTACTCTTCCTCTGTACCACCATCTGCTCAGATTCTCGAACCCCAAATCAAGAACCACCCTCAGGCCGCGGCTACCCACTTCCACATTCAATTTCCACAA
GAATTTCCATCTCTCTATCGCATTCTGCTCTTCTACTTCTCAATCCCCAGAAGCTAATGTCGAAACTGCGGAGTCCTGTGTCAATCTGGGCCTCCAGCTCTTCTCCAAAG
GACGGGTCAAAGAAGCTTTAGTCCAGTTTGATGCAGCACTTAATTTGGATCCTAACCCATTGGAGGCCCAAGCCGCATTCTACAATAAAGCATGCTGTCATGCCTATCGT
GGGGAAGGAAAGAAAGCTGCTGATTGTCTGCGTGTTGCATTAAGAGAATATAACCTCAAATTTGGCACAATTCTAAATGATCCTGACTTGGCCTCATTCAGAGCTCTTCC
CGAATTCAAGGAATTGCAAGAAGAGGCTAGGCTGGGTGGAGAGGATATAGGATATGGCTTTCGAAGAGATCTTAAACTCATTAGTGAAGTCCAAGCACCTTTTCGCGGGG
TTAGGAAGTTCTTTTATATAGCACTATCAGCAGCAGCCGGAATTTCTTTGTTGTTTACTATACCCCGGCTATTTCGTGCTATTCAAGGTGGTGATGAAGCTCCTGATGTT
TGGGAGACTGCCGGAAATTTAGCTGTTAATATGGGAGGTATTATTGTTCTTGTGGCATTATTCTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAG
AAATGAAACACTATCAAGGTTGCCTCTACGACTTTCCACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACCGTAAGACCGGTCATCTTAGCTGGTAAAAAGGAGA
CAGTTTCTTCAGCCATCCAGAAAGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGTGTTCTCTTAGTTCCCGTCGTATGGGGCGAAGGTAGGGAGCCCCAAATAGAA
AAGAGAGGGTTTGGGGCTCCAACCAATGCAACTGCTGTTCTGCCATCTATTGGGGAAGACTTTGAGAAACGAGCTCAGTCTATAACTGCAAAATCGAAGTTGAAGGCTGA
AATTCGATTCAGGGCCGAGGTTGTATCACCTGCAGAATGGGAAAGTTGGATAAGGGACCAGCAGAAGTCTGAAGGGGTTACCCCTGGTGAGGATGTCTACATAATATTGC
GACTGGATGGTCGAGTTCGTAGATCAGGGAGGGGAATGCCTGACTGGCCAAAAATTATTGAAGAGCTGCCACCAATGGAAGCTCTTCTAAGCAAGCTAGAAAGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETAESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAFYNKACCHAYR
GEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYIALSAAAGISLLFTIPRLFRAIQGGDEAPDV
WETAGNLAVNMGGIIVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVVWGEGREPQIE
KRGFGAPTNATAVLPSIGEDFEKRAQSITAKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

MS019055 (gene) of Bitter gourd (TR) v1 genome