CuGenDBv2

Gene ID	MS019087
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	scaffold20:1333721..1334481
RNA-Seq Expression	MS019087
Synteny	MS019087
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.2e-52

39.18

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Query:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE
        YLG+PL  +P S++FWD +++K++K+LS+W +  +SKGGR+TLI +TL +LP Y +S+F +P  +A+ +E   RNFLW G++N    +L+RW+Q+  P E
Subjt:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE

Query:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT
        +GGLG+  +   N   L KW W+FL E+  LW+R+I++KY      +   +  F+S    W      K+  + + + +  I++KV  G    FW+D W  
Subjt:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT

Query:  REPLCQAYPLLFSLHSRKLGSVQDFWSSSDNNWDIQFRRHLKDAE
          PL  A P LF+L + K GSV++FW+ S N+W +   R L+D E
Subjt:  REPLCQAYPLLFSLHSRKLGSVQDFWSSSDNNWDIQFRRHLKDAE

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.3e-51

40.41

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Query:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE
        YLG+PL  KP S++FWD I++K++K+LSSW +  +SKGGR+TLI +TL +LP Y LS+F +P  +A+ +E   RNFLW G++N    +L+RW+QV  P E
Subjt:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE

Query:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT
        +GGLG+  +   N   L KW W+FL E+  LW+R+I++KY             ++S    W      K+    + + +  I +KV  G    FW+D W  
Subjt:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT

Query:  REPLCQAYPLLFSLHSRKLGSVQDFWSSSDNNWDIQFRRHLKDAE
          PL    P LF+L + K GSV+D W+ S  +W+I   R L+D E
Subjt:  REPLCQAYPLLFSLHSRKLGSVQDFWSSSDNNWDIQFRRHLKDAE

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.0e-51

40.82

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Query:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE
        YLG+PL  KP S++FWD I++K++K+LSSW +  +SKGGR+TLI +TL +LP Y LS+F +P  +A+ +E   RNFLW G++N    +L+RW+QV  P E
Subjt:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE

Query:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT
        +GGLG+  +   N   L KW W+FL E+  LW+R+I++KY             ++S    W      K+    + + +  I +KV  G    FW+D W  
Subjt:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT

Query:  REPLCQAYPLLFSLHSRKLGSVQDFWSSSDNNWDIQFRRHLKDAE
          PL  A P LF+L + K GSV+D W+ S  +W+I   R L+D E
Subjt:  REPLCQAYPLLFSLHSRKLGSVQDFWSSSDNNWDIQFRRHLKDAE

TQD93576.1 hypothetical protein C1H46_020784 [Malus baccata]

5.1e-51

43.36

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Query:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE
        YLGLPL  +P++  FWDP++EK+ KRL SW    +S+GGRLTLIQ+ L +LP YY+S+F IP  V   LEKL++ FLW G       +LV+W+ V K  E
Subjt:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE

Query:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDH-QNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWL
        EGGLG+  ++++N   LAKW WRF  E  +LW +VI +KY   ++  N+ P  +  S++  W+DI    SS   L  +  +  ++VG G   RFW D WL
Subjt:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDH-QNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWL

Query:  TREPLCQAYPLLFSL---HSRKLGSVQDFWSSSDNNWDIQFRRHLKDAEIDELASL
           PL + +P LF L   H++ + S  DF S++  +W+  FRR+L +AEI+E A L
Subjt:  TREPLCQAYPLLFSL---HSRKLGSVQDFWSSSDNNWDIQFRRHLKDAEIDELASL

VVA30963.1 Hypothetical predicted protein, partial [Prunus dulcis]

2.4e-53

42.91

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Query:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE
        YLGLPL   P++ +FW+P+ +KV KRL  W    +SKGGRLTLIQA LS++P+YY+S+F +PT VA  +E+L+RNFLW G       +LVRW++V K  E
Subjt:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE

Query:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT
        EGGLG+  ++++N    AKW WRF LE  +LW R+I +KY    +       +  S +  WR+I K  +S            + VG G   RFW D+WL 
Subjt:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT

Query:  REPLCQAYPLLFSLHSRKLGSVQDFWSSSDN--NWDIQFRRHLKDAEIDELASL
           L   +P L SL  RK  S+  F ++ +   NWD  FRR+L +AEI E+  L
Subjt:  REPLCQAYPLLFSLHSRKLGSVQDFWSSSDN--NWDIQFRRHLKDAEIDELASL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein

5.8e-53

39.18

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Query:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE
        YLG+PL  +P S++FWD +++K++K+LS+W +  +SKGGR+TLI +TL +LP Y +S+F +P  +A+ +E   RNFLW G++N    +L+RW+Q+  P E
Subjt:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE

Query:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT
        +GGLG+  +   N   L KW W+FL E+  LW+R+I++KY      +   +  F+S    W      K+  + + + +  I++KV  G    FW+D W  
Subjt:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT

Query:  REPLCQAYPLLFSLHSRKLGSVQDFWSSSDNNWDIQFRRHLKDAE
          PL  A P LF+L + K GSV++FW+ S N+W +   R L+D E
Subjt:  REPLCQAYPLLFSLHSRKLGSVQDFWSSSDNNWDIQFRRHLKDAE

A0A5E4FU33 zf-RVT domain-containing protein (Fragment)

1.2e-53

42.91

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Query:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE
        YLGLPL   P++ +FW+P+ +KV KRL  W    +SKGGRLTLIQA LS++P+YY+S+F +PT VA  +E+L+RNFLW G       +LVRW++V K  E
Subjt:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE

Query:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT
        EGGLG+  ++++N    AKW WRF LE  +LW R+I +KY    +       +  S +  WR+I K  +S            + VG G   RFW D+WL 
Subjt:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT

Query:  REPLCQAYPLLFSLHSRKLGSVQDFWSSSDN--NWDIQFRRHLKDAEIDELASL
           L   +P L SL  RK  S+  F ++ +   NWD  FRR+L +AEI E+  L
Subjt:  REPLCQAYPLLFSLHSRKLGSVQDFWSSSDN--NWDIQFRRHLKDAEIDELASL

A0A803P465 Uncharacterized protein

1.3e-52

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Query:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE
        YLG+PL   P+  SFW+P+M+K  KRL  W    +SKGGRLTLIQ+ LS+LP Y+LS+F  P  V K LEK++R+FLW GS ++G ++LV WD+V +P  
Subjt:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE

Query:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT
        EGGLG+  ++ +N+  L KW WRF LE+ +LW RV++++Y  +D+          S KG WRDI      + + D     + +K+G G   RFW DVW+ 
Subjt:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT

Query:  REPLCQAYPLLFSLHSRKLGSVQDF---------WSSSDNNWDIQFRRHLKDAEIDELASL
          PL  A+P L  +   +   +++          W  S   W+ +FRR+L D E+  L SL
Subjt:  REPLCQAYPLLFSLHSRKLGSVQDF---------WSSSDNNWDIQFRRHLKDAEIDELASL

M5X4S0 Reverse transcriptase domain-containing protein (Fragment)

1.7e-52

43.31

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Query:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE
        YLGLPL   P++ +FW+P+MEKV KRL  W    +SKGGRLTLIQA LS++P+YY+S+F +P  VA  +E+L+RNFLW G       +LVRW++V K  E
Subjt:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE

Query:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT
        EGGLG+  ++++N    AKW WRF LE  +LW R+I +KY    +          S +  WR+I K  +S            + VG G   RFW D+WL 
Subjt:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT

Query:  REPLCQAYPLLFSLHSRKLGSVQDFWSSS--DNNWDIQFRRHLKDAEIDELASL
           L   +P L SL  RK  S+  F ++     NWD  FRR+L +AEI E+  L
Subjt:  REPLCQAYPLLFSLHSRKLGSVQDFWSSS--DNNWDIQFRRHLKDAEIDELASL

M5XV38 zf-RVT domain-containing protein

1.7e-52

43.31

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Query:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE
        YLGLPL   P++ +FW+P+MEKV KRL  W    +SKGGRLTLIQA LS++P+YY+S+F +P  VA  +E+L+RNFLW G       +LVRW++V K  E
Subjt:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE

Query:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT
        EGGLG+  ++++N    AKW WRF LE  +LW R+I +KY    +          S +  WR+I K  +S            + VG G   RFW D+WL 
Subjt:  EGGLGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLT

Query:  REPLCQAYPLLFSLHSRKLGSVQDFWSSS--DNNWDIQFRRHLKDAEIDELASL
           L   +P L SL  RK  S+  F ++     NWD  FRR+L +AEI E+  L
Subjt:  REPLCQAYPLLFSLHSRKLGSVQDFWSSS--DNNWDIQFRRHLKDAEIDELASL

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

2.4e-27

32.2

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Query:  LPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIEEGG
        +P+  K  +   +  I+E+V  R+S W    +S  GRLTL +A LS++P + +S   +P  +   L++L R FLW  +     Q+LV+W +V  P +EGG
Subjt:  LPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIEEGG

Query:  LGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIF--ASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLTR
        LG+   K  NR  ++K  WR L E+ +LW  V+  KY   + ++S   W+    S    WR I     +  + D     + +  G G   RFW D W++ 
Subjt:  LGLCCIKDKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIF--ASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLTR

Query:  EPLCQ
        +PL +
Subjt:  EPLCQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

6.9e-22

30.86

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Query:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE
        YLGLPL  K  + S + P++EK+R R+  W    +S  GRL LI + + +L  +++S F +P+   K+++ +  +FLW+G   N  +  V W  V  P +
Subjt:  YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIE

Query:  EGGLGLCCIKDKNR---------VFLAKWSWRFLLEETALWRRVILAKYVFSD-HQNSHPNWIFASTKGLWRDID
        EGGLG+  +K+ N+           L  W W+ +L+      R + + +V  D H  S+ ++ F +   + R ID
Subjt:  EGGLGLCCIKDKNR---------VFLAKWSWRFLLEETALWRRVILAKYVFSD-HQNSHPNWIFASTKGLWRDID

Sequences

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CDS sequence

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TACCTTGGCCTACCTCTACATGACAAGCCTCAATCAGCATCTTTTTGGGACCCGATCATGGAGAAAGTGAGGAAAAGACTTAGTTCATGGGATCACTTCATCATCTCGAA
AGGAGGTCGGCTCACCCTCATCCAAGCCACTTTATCCAATCTACCCACATATTACTTATCCATTTTCTCTATCCCAACTAAAGTGGCAAAGGATTTGGAAAAACTCATCA
GAAATTTTTTGTGGACGGGTTCAAACAACAACGGGGCACAAAACTTGGTTAGATGGGATCAAGTACAGAAACCAATTGAAGAAGGTGGGCTGGGTCTATGCTGTATCAAG
GACAAAAATCGGGTTTTTTTAGCCAAGTGGAGCTGGAGATTTCTTTTGGAAGAAACTGCCCTTTGGAGAAGAGTGATTTTGGCAAAATATGTCTTCTCCGACCACCAGAA
TTCTCACCCAAACTGGATTTTTGCATCAACAAAAGGTTTATGGAGAGACATTGACAAGCAGAAATCCTCTGCCAAGGTTCTGGATTATAACTTTGACAGAATCACTTATA
AAGTGGGTACAGGCTTTCTCTCAAGGTTCTGGATTGATGTTTGGCTCACCAGAGAACCCCTCTGCCAAGCCTACCCCCTTCTATTTTCCTTACACTCCAGAAAGTTGGGC
TCTGTACAAGATTTTTGGTCCTCGTCAGATAACAATTGGGACATCCAATTTCGAAGGCACCTAAAGGATGCTGAGATTGATGAGCTAGCATCTCTC

mRNA sequence

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Protein sequence

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YLGLPLHDKPQSASFWDPIMEKVRKRLSSWDHFIISKGGRLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWTGSNNNGAQNLVRWDQVQKPIEEGGLGLCCIK
DKNRVFLAKWSWRFLLEETALWRRVILAKYVFSDHQNSHPNWIFASTKGLWRDIDKQKSSAKVLDYNFDRITYKVGTGFLSRFWIDVWLTREPLCQAYPLLFSLHSRKLG
SVQDFWSSSDNNWDIQFRRHLKDAEIDELASL

MS019087 (gene) of Bitter gourd (TR) v1 genome