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MS019101 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019101
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotransposon protein, putative, unclassified
Genome locationscaffold20:1483239..1483322
RNA-Seq ExpressionMS019101
SyntenyMS019101
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RLN05404.1 retrotransposon protein, putative, unclassified [Panicum miliaceum]1.2e-0464.29Show/hide
Query:  GSDGKDMWCPIRFEKLPDFCYECGIIGH
        G + K +WCP+ +E LPDFCY CGIIGH
Subjt:  GSDGKDMWCPIRFEKLPDFCYECGIIGH
XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]8.5e-0885.19Show/hide
Query:  SDGKDMWCPIRFEKLPDFCYECGIIGH
        SDGKD+WCP+R+EKLPDFCYECG IGH
Subjt:  SDGKDMWCPIRFEKLPDFCYECGIIGH
XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]3.2e-0777.78Show/hide
Query:  SDGKDMWCPIRFEKLPDFCYECGIIGH
        +DGKD+WCP+R+EKLPDFCYECG +GH
Subjt:  SDGKDMWCPIRFEKLPDFCYECGIIGH
XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]9.4e-0774.07Show/hide
Query:  SDGKDMWCPIRFEKLPDFCYECGIIGH
        SDGKD+WCP+R+E+LPDFCY CG +GH
Subjt:  SDGKDMWCPIRFEKLPDFCYECGIIGH
XP_039815069.1 uncharacterized protein LOC120677956 [Panicum virgatum]6.8e-0564.29Show/hide
Query:  GSDGKDMWCPIRFEKLPDFCYECGIIGH
        G + K +WCP+ +E LPDFCY CGIIGH
Subjt:  GSDGKDMWCPIRFEKLPDFCYECGIIGH
TrEMBL top hitse value%identityAlignment
A0A0P0V7D8 Os01g0714300 protein7.3e-0564.29Show/hide
Query:  GSDGKDMWCPIRFEKLPDFCYECGIIGH
        G + K +WCP+ +E LPDFCY CGIIGH
Subjt:  GSDGKDMWCPIRFEKLPDFCYECGIIGH
A0A3L6RLG8 Retrotransposon protein, putative, unclassified5.6e-0564.29Show/hide
Query:  GSDGKDMWCPIRFEKLPDFCYECGIIGH
        G + K +WCP+ +E LPDFCY CGIIGH
Subjt:  GSDGKDMWCPIRFEKLPDFCYECGIIGH
A0A6J1D765 uncharacterized protein LOC1110179024.1e-0885.19Show/hide
Query:  SDGKDMWCPIRFEKLPDFCYECGIIGH
        SDGKD+WCP+R+EKLPDFCYECG IGH
Subjt:  SDGKDMWCPIRFEKLPDFCYECGIIGH
A0A6J1DAR4 uncharacterized protein LOC1110189541.6e-0777.78Show/hide
Query:  SDGKDMWCPIRFEKLPDFCYECGIIGH
        +DGKD+WCP+R+EKLPDFCYECG +GH
Subjt:  SDGKDMWCPIRFEKLPDFCYECGIIGH
A0A6J1DVS4 uncharacterized protein LOC1110235554.6e-0774.07Show/hide
Query:  SDGKDMWCPIRFEKLPDFCYECGIIGH
        SDGKD+WCP+R+E+LPDFCY CG +GH
Subjt:  SDGKDMWCPIRFEKLPDFCYECGIIGH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGCAGCGATGGAAAGGATATGTGGTGTCCAATTCGGTTCGAGAAACTACCAGATTTCTGCTATGAATGTGGAATAATTGGTCAT
mRNA sequenceShow/hide mRNA sequence
GGCAGCGATGGAAAGGATATGTGGTGTCCAATTCGGTTCGAGAAACTACCAGATTTCTGCTATGAATGTGGAATAATTGGTCAT
Protein sequenceShow/hide protein sequence
GSDGKDMWCPIRFEKLPDFCYECGIIGH