; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS019113 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019113
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionATP-dependent Clp protease proteolytic subunit
Genome locationscaffold20:1573517..1577088
RNA-Seq ExpressionMS019113
SyntenyMS019113
Gene Ontology termsGO:0006515 - protein quality control for misfolded or incompletely synthesized proteins (biological process)
GO:0009368 - endopeptidase Clp complex (cellular component)
GO:0009526 - plastid envelope (cellular component)
GO:0009570 - chloroplast stroma (cellular component)
GO:0004176 - ATP-dependent peptidase activity (molecular function)
GO:0004252 - serine-type endopeptidase activity (molecular function)
GO:0051117 - ATPase binding (molecular function)
InterPro domainsIPR001907 - ATP-dependent Clp protease proteolytic subunit
IPR018215 - ClpP, Ser active site
IPR023562 - Clp protease proteolytic subunit /Translocation-enhancing protein TepA
IPR029045 - ClpP/crotonase-like domain superfamily
IPR033135 - ClpP, histidine active site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008457103.1 PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]3.5e-15685.59Show/hide
Query:  MEMSFTYTPSPSPQRLMRFDHGV-LSSQFPLFTPRKHSHGGNSSLNGLRTPK-SAPLVK-ASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTN
        ME+SFT+ PSPSP  L RFDHG+  SS  P+ TP  HSHG N + N  R    S P++   SLSSSS+RRTLSSNWDVL N+SA+SAPSL RFEELDTTN
Subjt:  MEMSFTYTPSPSPQRLMRFDHGV-LSSQFPLFTPRKHSHGGNSSLNGLRTPK-SAPLVK-ASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTN

Query:  MLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVM
        MLLRQRIIFLGSQ VDD+TADFIISQLLFLDAED TKDIKLFINSPGGSVTAGMGIYDAMKLCKADVST+CLGLAASMGAFLLA+GSKGKRFCMPNGRVM
Subjt:  MLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVM

Query:  IHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGS
        IHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIA+A  PPKTRVWDLWKVEGS
Subjt:  IHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGS

Query:  RKAKKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSPV
        RKAKKNLPSE KIL+NGYQGG+G+DEERG+QQETEEPSPV
Subjt:  RKAKKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSPV

XP_011651427.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis sativus]5.6e-15484.71Show/hide
Query:  MEMSFTYTPSPSPQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPK-SAPLVK-ASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTNM
        ME+SFT+ PSPSP  L R DHG  SS FP+ TP KHSHGGN + N  R    S P+V   S SSSS+RRTLSSNWDV  N+S +SA SL RFEELDTTNM
Subjt:  MEMSFTYTPSPSPQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPK-SAPLVK-ASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTNM

Query:  LLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMI
        LLRQRIIFLGSQ VDDMTADFIISQLLFLDAED TKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLA+GSKGKRFCMPNGRVMI
Subjt:  LLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMI

Query:  HQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSR
        HQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKP+EQIELDT+RDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIA+A  PPKTR+WDLWKVEGSR
Subjt:  HQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSR

Query:  KAKKNLPSEDKILQNGY-QGGQGNDEERGTQQETEEPSPV
        KAKKNLPSE KIL+NGY +GGQG+D+ERG QQETEEPSPV
Subjt:  KAKKNLPSEDKILQNGY-QGGQGNDEERGTQQETEEPSPV

XP_022143418.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Momordica charantia]2.1e-18599.7Show/hide
Query:  MEMSFTYTPSPSPQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAPLVKASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTNMLL
        MEMSFTYTPSPSPQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAPLVKASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTNMLL
Subjt:  MEMSFTYTPSPSPQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAPLVKASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTNMLL

Query:  RQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQ
        RQRIIFLGSQ VDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQ
Subjt:  RQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQ

Query:  PLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSRKA
        PLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSRKA
Subjt:  PLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSRKA

Query:  KKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSPV
        KKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSPV
Subjt:  KKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSPV

XP_022948597.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucurbita moschata]5.6e-15485.55Show/hide
Query:  MEMSFTYTPSPS-PQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAPL--VKASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTN
        ME+SFTY PSPS   RLM F+HGVL+S FP+ TP KHSHG NSS N  R  KS P+  VKASLSSS +RRTLSSNWDVL N+SA SAP+L RFEELDTTN
Subjt:  MEMSFTYTPSPS-PQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAPL--VKASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTN

Query:  MLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVM
        MLLRQRIIFLGSQ VDDMTADFIISQLLFLDAED TKDIKL INSPGGSVTAGMGIYDAMKLCKADVSTVC+GLAASMGAFLLAAGSKGKRFCMPNGRVM
Subjt:  MLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVM

Query:  IHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGS
        IHQPLGTAGG+AT+MSIR+REMAYHKIKLNKI SRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIA+A  PPKTRVWDLWK+EGS
Subjt:  IHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGS

Query:  RKAKKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSP
        RKAKKNLPSE KILQNGY   QG+DEER  Q ETEEPSP
Subjt:  RKAKKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSP

XP_038902354.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Benincasa hispida]5.2e-16086.05Show/hide
Query:  MEMSFTYTPSPSPQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAPLVKASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTNMLL
        ME+SFTY PS SP RLMR DHG+ SS FP+  P KHSHGGNS+ N  R   S P+V  S +SSS+RRTLSS+WDVL+N+SA+SAPSL RFEELDTTNMLL
Subjt:  MEMSFTYTPSPSPQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAPLVKASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTNMLL

Query:  RQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQ
        RQRIIFLGSQ VDDMTADFIISQLLFLDAED TKDIKLFINSPGGSVTAGMGIYDAMKLCKADVST+CLGLAASMGAFLLA+GSKGKRFCMPNGRVMIHQ
Subjt:  RQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQ

Query:  PLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSRKA
        PLGTAGGKATEMSIRIREM YHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAK+YGLIDEVIDDGKPGLIAP A+A  PPKTRVWDLWKVEGSRK 
Subjt:  PLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSRKA

Query:  KKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSPV
        KKNLPSE+KILQNGYQ GQG+DEERG+QQETEE SPV
Subjt:  KKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSPV

TrEMBL top hitse value%identityAlignment
A0A0A0LA84 ATP-dependent Clp protease proteolytic subunit2.7e-15484.71Show/hide
Query:  MEMSFTYTPSPSPQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPK-SAPLVK-ASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTNM
        ME+SFT+ PSPSP  L R DHG  SS FP+ TP KHSHGGN + N  R    S P+V   S SSSS+RRTLSSNWDV  N+S +SA SL RFEELDTTNM
Subjt:  MEMSFTYTPSPSPQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPK-SAPLVK-ASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTNM

Query:  LLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMI
        LLRQRIIFLGSQ VDDMTADFIISQLLFLDAED TKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLA+GSKGKRFCMPNGRVMI
Subjt:  LLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMI

Query:  HQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSR
        HQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKP+EQIELDT+RDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIA+A  PPKTR+WDLWKVEGSR
Subjt:  HQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSR

Query:  KAKKNLPSEDKILQNGY-QGGQGNDEERGTQQETEEPSPV
        KAKKNLPSE KIL+NGY +GGQG+D+ERG QQETEEPSPV
Subjt:  KAKKNLPSEDKILQNGY-QGGQGNDEERGTQQETEEPSPV

A0A1S3C615 ATP-dependent Clp protease proteolytic subunit1.7e-15685.59Show/hide
Query:  MEMSFTYTPSPSPQRLMRFDHGV-LSSQFPLFTPRKHSHGGNSSLNGLRTPK-SAPLVK-ASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTN
        ME+SFT+ PSPSP  L RFDHG+  SS  P+ TP  HSHG N + N  R    S P++   SLSSSS+RRTLSSNWDVL N+SA+SAPSL RFEELDTTN
Subjt:  MEMSFTYTPSPSPQRLMRFDHGV-LSSQFPLFTPRKHSHGGNSSLNGLRTPK-SAPLVK-ASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTN

Query:  MLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVM
        MLLRQRIIFLGSQ VDD+TADFIISQLLFLDAED TKDIKLFINSPGGSVTAGMGIYDAMKLCKADVST+CLGLAASMGAFLLA+GSKGKRFCMPNGRVM
Subjt:  MLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVM

Query:  IHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGS
        IHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIA+A  PPKTRVWDLWKVEGS
Subjt:  IHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGS

Query:  RKAKKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSPV
        RKAKKNLPSE KIL+NGYQGG+G+DEERG+QQETEEPSPV
Subjt:  RKAKKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSPV

A0A5A7UZN2 ATP-dependent Clp protease proteolytic subunit1.9e-15277.6Show/hide
Query:  MEMSFTYTPSPSPQRLMRFDHGV-LSSQFPLFTPRKHSHGGNSSLNGLRTPK-SAPLVK-ASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTN
        ME+SFT+ PSPSP  L RFDHG+  SS  P+ TP  HSHG N + N  R    S P++   SLSSSS+RRTLSSNWDVL N+SA+SAPSL RFEELDTTN
Subjt:  MEMSFTYTPSPSPQRLMRFDHGV-LSSQFPLFTPRKHSHGGNSSLNGLRTPK-SAPLVK-ASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTN

Query:  MLLRQRIIFLGSQV-----------------------------------VDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKA
        MLLRQRIIFLGSQ                                    VDD+TADFIISQLLFLDAED TKDIKLFINSPGGSVTAGMGIYDAMKLCKA
Subjt:  MLLRQRIIFLGSQV-----------------------------------VDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKA

Query:  DVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLI
        DVST+CLGLAASMGAFLLA+GSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLI
Subjt:  DVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLI

Query:  DEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSRKAKKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSPV
        DEVIDDGKPGLIAPIA+A  PPKTRVWDLWKVEGSRKAKKNLPSE KIL+NGYQGG+G+DEERG+QQETEEPSPV
Subjt:  DEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSRKAKKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSPV

A0A6J1CQN6 ATP-dependent Clp protease proteolytic subunit1.0e-18599.7Show/hide
Query:  MEMSFTYTPSPSPQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAPLVKASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTNMLL
        MEMSFTYTPSPSPQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAPLVKASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTNMLL
Subjt:  MEMSFTYTPSPSPQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAPLVKASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTNMLL

Query:  RQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQ
        RQRIIFLGSQ VDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQ
Subjt:  RQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQ

Query:  PLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSRKA
        PLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSRKA
Subjt:  PLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSRKA

Query:  KKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSPV
        KKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSPV
Subjt:  KKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSPV

A0A6J1G9P1 ATP-dependent Clp protease proteolytic subunit2.7e-15485.55Show/hide
Query:  MEMSFTYTPSPS-PQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAPL--VKASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTN
        ME+SFTY PSPS   RLM F+HGVL+S FP+ TP KHSHG NSS N  R  KS P+  VKASLSSS +RRTLSSNWDVL N+SA SAP+L RFEELDTTN
Subjt:  MEMSFTYTPSPS-PQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAPL--VKASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTN

Query:  MLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVM
        MLLRQRIIFLGSQ VDDMTADFIISQLLFLDAED TKDIKL INSPGGSVTAGMGIYDAMKLCKADVSTVC+GLAASMGAFLLAAGSKGKRFCMPNGRVM
Subjt:  MLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVM

Query:  IHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGS
        IHQPLGTAGG+AT+MSIR+REMAYHKIKLNKI SRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIA+A  PPKTRVWDLWK+EGS
Subjt:  IHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGS

Query:  RKAKKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSP
        RKAKKNLPSE KILQNGY   QG+DEER  Q ETEEPSP
Subjt:  RKAKKNLPSEDKILQNGYQGGQGNDEERGTQQETEEPSP

SwissProt top hitse value%identityAlignment
O34125 ATP-dependent Clp protease proteolytic subunit 21.4e-5461.27Show/hide
Query:  DTTNMLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPN
        D  + LLR+RI+FLG+  VDD  AD I++QLLFL+AED  KDI+L+INSPGGSVTAGM IYD M+    DV+T+C GLAASMGAFLL+ G++GKR  +P+
Subjt:  DTTNMLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPN

Query:  GRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVI
         R+MIHQPLG A G+A ++ I+ RE+ YHK  LN + ++ TG+PLE+IE+DTDRD FM+P EAK YGLID+V+
Subjt:  GRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVI

Q3MFR5 ATP-dependent Clp protease proteolytic subunit 16.2e-5562.64Show/hide
Query:  DTTNMLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPN
        D  + LLR+RIIFLG Q VD   A+ I++QLLFLDAED  KDI L+INSPGGSVTAGMGI+D MK  + DV T+C GLAASMGAFLL+AG+KGKR  +P+
Subjt:  DTTNMLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPN

Query:  GRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVID
         R+MIHQPLG A G+AT++ I+ RE+ YHK +LN   +  TG+P+E+I  DT+RD FM+P EA++YGLID+VID
Subjt:  GRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVID

Q5N1P6 ATP-dependent Clp protease proteolytic subunit 31.4e-5461.27Show/hide
Query:  DTTNMLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPN
        D  + LLR+RI+FLG+  VDD  AD I++QLLFL+AED  KDI+L+INSPGGSVTAGM IYD M+    DV+T+C GLAASMGAFLL+ G++GKR  +P+
Subjt:  DTTNMLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPN

Query:  GRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVI
         R+MIHQPLG A G+A ++ I+ RE+ YHK  LN + ++ TG+PLE+IE+DTDRD FM+P EAK YGLID+V+
Subjt:  GRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVI

Q8YXH5 ATP-dependent Clp protease proteolytic subunit 13.6e-5562.64Show/hide
Query:  DTTNMLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPN
        D  + LLR+RI+FLG Q VD   A+ I++QLLFLDAED  KDI L+INSPGGSVTAGMGI+D MK  + DV T+C GLAASMGAFLL+AG+KGKR  +P+
Subjt:  DTTNMLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPN

Query:  GRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVID
         R+MIHQPLG A G+AT++ I+ RE+ YHK +LN   +  TG+P+E+I  DT+RD FM+P EAK+YGLID+VID
Subjt:  GRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVID

Q9SXJ6 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic7.2e-11271.24Show/hide
Query:  MRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAP--LVKASLS-SSSMRRTLSSNWDVLENFS----ATSAPSLARFEELDTTNMLLRQRIIFLGS
        +R      S+   L  P K+    N  +   R PK++    V++S+S S   R+TLSSNWDV  +FS    A S   L  FEELDTTNMLLRQRI+FLGS
Subjt:  MRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAP--LVKASLS-SSSMRRTLSSNWDVLENFS----ATSAPSLARFEELDTTNMLLRQRIIFLGS

Query:  QVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQPLGTAGGKA
        Q VDDMTAD +ISQLL LDAEDS +DI LFINSPGGS+TAGMGIYDAMK CKADVSTVCLGLAASMGAFLLA+GSKGKR+CMPN +VMIHQPLGTAGGKA
Subjt:  QVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQPLGTAGGKA

Query:  TEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSRKAKKNLPSEDK
        TEMSIRIREM YHKIKLNKIFSRITGKP  +IE DTDRDNF+NPWEAKEYGLID VIDDGKPGLIAPI D   PPKT+VWDLWKVEG++K   NLPSE  
Subjt:  TEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSRKAKKNLPSEDK

Query:  ILQNGY
        + QNGY
Subjt:  ILQNGY

Arabidopsis top hitse value%identityAlignment
AT1G02560.1 nuclear encoded CLP protease 52.1e-5058.43Show/hide
Query:  RFEELDTTNMLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKR
        RF+ +   + L + RII  G  V DDM A+ I++QLL+LDA D TKDI +++NSPGGSVTAGM I+D M+  + DVSTVC+GLAASMGAFLL+AG+KGKR
Subjt:  RFEELDTTNMLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKR

Query:  FCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVI
        + +PN R+MIHQPLG A G  T++ I+  EM +HK  LN   +  TG+ LE+I  DTDRD FM+  EAKEYGLID VI
Subjt:  FCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVI

AT1G11750.1 CLP protease proteolytic subunit 65.6e-3542.86Show/hide
Query:  LDTTNMLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMP
        LD +++L R RIIF+G Q ++   A  +ISQL+ L + D   DI +++N PGGS  + + IYD M   K  V TV  G+AAS GA LLA G KG R+ MP
Subjt:  LDTTNMLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMP

Query:  NGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVID
        N RVMIHQP    GG   ++  ++ E    + K++++++  TG+PLE+++  T+RD F++  EA E+GLID +++
Subjt:  NGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVID

AT1G66670.1 CLP protease proteolytic subunit 35.1e-11371.24Show/hide
Query:  MRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAP--LVKASLS-SSSMRRTLSSNWDVLENFS----ATSAPSLARFEELDTTNMLLRQRIIFLGS
        +R      S+   L  P K+    N  +   R PK++    V++S+S S   R+TLSSNWDV  +FS    A S   L  FEELDTTNMLLRQRI+FLGS
Subjt:  MRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAP--LVKASLS-SSSMRRTLSSNWDVLENFS----ATSAPSLARFEELDTTNMLLRQRIIFLGS

Query:  QVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQPLGTAGGKA
        Q VDDMTAD +ISQLL LDAEDS +DI LFINSPGGS+TAGMGIYDAMK CKADVSTVCLGLAASMGAFLLA+GSKGKR+CMPN +VMIHQPLGTAGGKA
Subjt:  QVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQPLGTAGGKA

Query:  TEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSRKAKKNLPSEDK
        TEMSIRIREM YHKIKLNKIFSRITGKP  +IE DTDRDNF+NPWEAKEYGLID VIDDGKPGLIAPI D   PPKT+VWDLWKVEG++K   NLPSE  
Subjt:  TEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSRKAKKNLPSEDK

Query:  ILQNGY
        + QNGY
Subjt:  ILQNGY

AT5G23140.1 nuclear-encoded CLP protease P71.2e-4045.71Show/hide
Query:  DTTNMLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPN
        D  + LL++RII +   + DD T+  +++QLL+L++E+ +K I +++NSPGG VTAG+ IYD M+  ++ +ST+CLG AASM + LLAAG+KG+R  +PN
Subjt:  DTTNMLLRQRIIFLGSQVVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPN

Query:  GRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDD
          VMIHQP G   G+A +++I  +++      LN+++ + TG+PL+ +  + DRD+FM P EAK +G+IDEVID+
Subjt:  GRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDD

AT5G45390.1 CLP protease P41.6e-5044.06Show/hide
Query:  SSQFPLFTPRKHSHGGNSSLNGLRTPKSAPLVKASLSSSSMRRTLSS--NWDVLENFSATSAPSLARFEELDTTNMLLRQRIIFLGSQVVDDMTADFIIS
        SS  P     + +   ++S +    P +  L    L S  +R T  S   +       + +  S  R  E D   +LLR+RI+FLGS  +DD  AD I+S
Subjt:  SSQFPLFTPRKHSHGGNSSLNGLRTPKSAPLVKASLSSSSMRRTLSS--NWDVLENFSATSAPSLARFEELDTTNMLLRQRIIFLGSQVVDDMTADFIIS

Query:  QLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYH
        QLL LDA+D  KDIKLFINSPGGS++A M IYD ++L +ADVST+ LG+AAS  + +L AG+KGKRF MPN R+MIHQPLG A G+A ++ I+ +E+ ++
Subjt:  QLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYH

Query:  KIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAP
        K  +  I +  T +  EQ+  D DRD +M+P EA EYGLID VID      + P+ D   P
Subjt:  KIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATGAGTTTCACATACACGCCTTCTCCTTCGCCTCAGAGGCTCATGCGCTTCGACCATGGAGTTCTAAGTTCTCAGTTTCCACTTTTCACTCCTCGGAAGCACTC
CCATGGCGGCAATTCCAGTTTAAATGGTCTTAGGACCCCAAAATCGGCTCCTCTAGTGAAGGCCTCGCTCAGTTCTTCGTCGATGAGGCGGACCTTATCAAGTAATTGGG
ACGTTTTGGAGAATTTTTCTGCAACTTCCGCTCCATCGCTGGCTAGGTTCGAAGAGCTCGACACTACCAACATGCTTCTCCGCCAGCGAATCATCTTCTTGGGCTCTCAG
GTAGTTGATGACATGACAGCAGATTTCATCATAAGCCAGCTACTGTTTCTTGATGCTGAAGACTCAACAAAAGACATCAAATTGTTTATCAACTCACCTGGTGGCTCTGT
CACTGCTGGAATGGGAATATACGATGCAATGAAGTTGTGCAAGGCCGACGTTTCAACAGTTTGTCTAGGACTCGCTGCATCTATGGGAGCATTTCTTCTAGCTGCTGGTT
CAAAGGGAAAGCGATTCTGCATGCCCAATGGGAGAGTGATGATCCATCAACCTCTCGGAACAGCTGGAGGGAAGGCAACAGAGATGAGTATACGGATACGAGAAATGGCG
TATCACAAGATCAAGCTGAACAAAATTTTTTCAAGAATCACAGGAAAGCCATTAGAGCAGATTGAATTGGACACGGACCGCGATAATTTCATGAATCCCTGGGAAGCTAA
GGAATATGGTTTGATTGATGAAGTTATTGATGATGGGAAGCCAGGACTCATTGCTCCAATTGCAGATGCAGCTGCTCCGCCAAAAACCCGAGTCTGGGATCTATGGAAGG
TGGAAGGGAGTAGGAAAGCCAAGAAGAATCTGCCTTCAGAAGACAAGATCTTGCAGAATGGATATCAAGGGGGTCAAGGAAACGACGAGGAGCGCGGTACCCAACAAGAA
ACAGAAGAACCGAGTCCTGTA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATGAGTTTCACATACACGCCTTCTCCTTCGCCTCAGAGGCTCATGCGCTTCGACCATGGAGTTCTAAGTTCTCAGTTTCCACTTTTCACTCCTCGGAAGCACTC
CCATGGCGGCAATTCCAGTTTAAATGGTCTTAGGACCCCAAAATCGGCTCCTCTAGTGAAGGCCTCGCTCAGTTCTTCGTCGATGAGGCGGACCTTATCAAGTAATTGGG
ACGTTTTGGAGAATTTTTCTGCAACTTCCGCTCCATCGCTGGCTAGGTTCGAAGAGCTCGACACTACCAACATGCTTCTCCGCCAGCGAATCATCTTCTTGGGCTCTCAG
GTAGTTGATGACATGACAGCAGATTTCATCATAAGCCAGCTACTGTTTCTTGATGCTGAAGACTCAACAAAAGACATCAAATTGTTTATCAACTCACCTGGTGGCTCTGT
CACTGCTGGAATGGGAATATACGATGCAATGAAGTTGTGCAAGGCCGACGTTTCAACAGTTTGTCTAGGACTCGCTGCATCTATGGGAGCATTTCTTCTAGCTGCTGGTT
CAAAGGGAAAGCGATTCTGCATGCCCAATGGGAGAGTGATGATCCATCAACCTCTCGGAACAGCTGGAGGGAAGGCAACAGAGATGAGTATACGGATACGAGAAATGGCG
TATCACAAGATCAAGCTGAACAAAATTTTTTCAAGAATCACAGGAAAGCCATTAGAGCAGATTGAATTGGACACGGACCGCGATAATTTCATGAATCCCTGGGAAGCTAA
GGAATATGGTTTGATTGATGAAGTTATTGATGATGGGAAGCCAGGACTCATTGCTCCAATTGCAGATGCAGCTGCTCCGCCAAAAACCCGAGTCTGGGATCTATGGAAGG
TGGAAGGGAGTAGGAAAGCCAAGAAGAATCTGCCTTCAGAAGACAAGATCTTGCAGAATGGATATCAAGGGGGTCAAGGAAACGACGAGGAGCGCGGTACCCAACAAGAA
ACAGAAGAACCGAGTCCTGTA
Protein sequenceShow/hide protein sequence
MEMSFTYTPSPSPQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPKSAPLVKASLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTNMLLRQRIIFLGSQ
VVDDMTADFIISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMA
YHKIKLNKIFSRITGKPLEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSRKAKKNLPSEDKILQNGYQGGQGNDEERGTQQE
TEEPSPV