; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS019115 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019115
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold20:1634884..1635111
RNA-Seq ExpressionMS019115
SyntenyMS019115
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OVA08061.1 Reverse transcriptase zinc-binding domain [Macleaya cordata]3.7e-0538.96Show/hide
Query:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGWV-RASLWNLWKERNNRIFNNTSHSF
        + +HCP A D W F+ + FGF  C P      LL    GC F    + LW  +  A  W LWK+RN  IF++   SF
Subjt:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGWV-RASLWNLWKERNNRIFNNTSHSF

RVX03908.1 putative ribonuclease H protein [Vitis vinifera]7.4e-0639.47Show/hide
Query:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGWVRASLWNLWKERNNRIFNNTSHSF
        I LHC  A   WSFLF +FG    LP +I   LL  +  C  + + K+         W +WKERN+R F N  H+F
Subjt:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGWVRASLWNLWKERNNRIFNNTSHSF

XP_026451761.1 uncharacterized protein LOC113352106 [Papaver somniferum]1.7e-0543.24Show/hide
Query:  IFLHCPNASDWWSFLFQVFGFVGCLPGTI----DSWLLEMVQGCAFRGKAKILWGWVR-ASLWNLWKERNNRIF
        IFLHCP A++ WSF  + F      P T+    +SW L  +Q     GK + LW  V  A LW+LWKER++R+F
Subjt:  IFLHCPNASDWWSFLFQVFGFVGCLPGTI----DSWLLEMVQGCAFRGKAKILWGWVR-ASLWNLWKERNNRIF

XP_030479135.1 uncharacterized protein LOC115696374 [Cannabis sativa]6.3e-0536.84Show/hide
Query:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGW-VRASLWNLWKERNNRIFNNTSHS
        +FLHC  +S  WS L + FG +  LP ++   L+  ++G     +  ILW   V A++W +W ERN RIF +  +S
Subjt:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGW-VRASLWNLWKERNNRIFNNTSHS

XP_030505044.1 uncharacterized protein LOC115720016 [Cannabis sativa]8.2e-0536.84Show/hide
Query:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGW-VRASLWNLWKERNNRIFNNTSHS
        +FLHC  +S  WS L + FG +  LP ++   L+  ++G     +  ILW   V A++W +W ERN RIF +  +S
Subjt:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGW-VRASLWNLWKERNNRIFNNTSHS

TrEMBL top hitse value%identityAlignment
A0A2N9FPK5 zf-RVT domain-containing protein3.6e-0638.96Show/hide
Query:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGWV-RASLWNLWKERNNRIFNNTSHSF
        +FLHCP A + WS +F +FG    +P TI   LLE  QGC    +  ++W  +    +W +W+ERN R F N   S+
Subjt:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGWV-RASLWNLWKERNNRIFNNTSHSF

A0A2N9FUV0 Uncharacterized protein3.0e-0539.19Show/hide
Query:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGWVRASL-WNLWKERNNRIFNNTS
        + LHCP A   WS++FQ FG    LPGT+ + L     G      +  +W  V A L W +W+ERN+R F + S
Subjt:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGWVRASL-WNLWKERNNRIFNNTS

A0A2N9G054 zf-RVT domain-containing protein3.6e-0638.96Show/hide
Query:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGWV-RASLWNLWKERNNRIFNNTSHSF
        +FLHCP A + WS +F +FG    +P TI   LLE  QGC    +  ++W  +    +W +W+ERN R F N   S+
Subjt:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGWV-RASLWNLWKERNNRIFNNTSHSF

A0A2N9GZQ1 Reverse transcriptase domain-containing protein4.0e-0539.19Show/hide
Query:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGWVRASL-WNLWKERNNRIFNNTS
        + LHCP A   WS++FQ FG    LPGT+ + L     G      +  +W  V   L W +WKERN+R F + S
Subjt:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGWVRASL-WNLWKERNNRIFNNTS

A0A438J4L4 Putative ribonuclease H protein3.6e-0639.47Show/hide
Query:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGWVRASLWNLWKERNNRIFNNTSHSF
        I LHC  A   WSFLF +FG    LP +I   LL  +  C  + + K+         W +WKERN+R F N  H+F
Subjt:  IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGWVRASLWNLWKERNNRIFNNTSHSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATATTTCTGCATTGTCCTAATGCCTCAGATTGGTGGTCCTTCCTGTTCCAGGTCTTTGGCTTTGTGGGATGTTTGCCGGGGACAATTGACAGTTGGCTTTTGGAGATGGT
TCAGGGCTGTGCTTTCAGAGGAAAAGCTAAGATCCTTTGGGGTTGGGTTAGAGCTTCCCTTTGGAACTTATGGAAAGAAAGGAACAACCGCATTTTTAACAATACTTCTC
ATTCTTTT
mRNA sequenceShow/hide mRNA sequence
ATATTTCTGCATTGTCCTAATGCCTCAGATTGGTGGTCCTTCCTGTTCCAGGTCTTTGGCTTTGTGGGATGTTTGCCGGGGACAATTGACAGTTGGCTTTTGGAGATGGT
TCAGGGCTGTGCTTTCAGAGGAAAAGCTAAGATCCTTTGGGGTTGGGTTAGAGCTTCCCTTTGGAACTTATGGAAAGAAAGGAACAACCGCATTTTTAACAATACTTCTC
ATTCTTTT
Protein sequenceShow/hide protein sequence
IFLHCPNASDWWSFLFQVFGFVGCLPGTIDSWLLEMVQGCAFRGKAKILWGWVRASLWNLWKERNNRIFNNTSHSF