; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS019129 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019129
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationscaffold20:1757102..1757537
RNA-Seq ExpressionMS019129
SyntenyMS019129
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060761.1 formin-like protein 3 [Cucumis melo var. makuwa]5.0e-3558.04Show/hide
Query:  LLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR-SPPPPPP----YCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDN
        LLS S L L ++L  + TS  +S+  +NPD EIKCGSCPCS PCIQ+ SPPPPPP     C P +S  PPPPRFIYT   P   +PPPPRF YTTGVP N
Subjt:  LLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR-SPPPPPP----YCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDN

Query:  VYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW
        +Y+ D N+ WYYFSG T  +P + A +V  GCGAL LM F KW
Subjt:  VYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW

KAG6581215.1 hypothetical protein SDJN03_21217, partial [Cucurbita argyrosperma subsp. sororia]9.7e-3961.22Show/hide
Query:  MAP-PLLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR----SPPPPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTG
        MAP   +  SL FLF+ L  AD+ P+  V L++P+ EIKCGSCPCS PC+++     PPPPPP C PAL PPPPPPRFIYT+  P    PPPPRFIYTTG
Subjt:  MAP-PLLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR----SPPPPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTG

Query:  VPDNVYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW
        VP N+YQ D N++WYYFSG T  +PA  A +V  GCGAL+LMAFGKW
Subjt:  VPDNVYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW

KAG7017949.1 hypothetical protein SDJN02_19815, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-3862.5Show/hide
Query:  MAP-PLLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCI-QRSPPPPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPD
        MAP   +  SL FLF+ L  AD+ P+  V  ++P+ EIKCGSCPCS PC+ Q  PPPPPP C PAL PPPPPPRFIYT+  P    PPPPRFIYTTGVP 
Subjt:  MAP-PLLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCI-QRSPPPPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPD

Query:  NVYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW
        N+YQ D N++WYYFSG T  +PA  A +V  GCGAL+LMAFGKW
Subjt:  NVYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW

XP_022984145.1 probable pathogenesis-related protein ARB_02861 [Cucurbita maxima]4.5e-3659.59Show/hide
Query:  MAP-PLLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR---SPPPPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGV
        MAP   +  SL FLF+ L  A++ P+  V  ++P+ EIKCGSCPCS PC+++    PPPPPP C PAL PPPPPPRFIYT+  P    PPPPRFIYTTGV
Subjt:  MAP-PLLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR---SPPPPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGV

Query:  PDNVYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW
        P N+YQ D N++WYYFSG T    A  A +V  GCGAL+LMAFGKW
Subjt:  PDNVYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW

XP_023528316.1 leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]4.8e-3859.73Show/hide
Query:  LKMAP-PLLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR----SPPPPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYT
        +KMAP   +  SL FLF+ L  AD+ P   V  ++P+ EIKCGSCPCS PC+++     PPPPPP C PAL PPPPPPRFIYT   P    PPPPRFIYT
Subjt:  LKMAP-PLLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR----SPPPPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYT

Query:  TGVPDNVYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW
        TGVP N+YQ D N++WYYFSG T  +PA    +V  GCGAL+LMAFGKW
Subjt:  TGVPDNVYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW

TrEMBL top hitse value%identityAlignment
A0A0A0L7R0 Uncharacterized protein4.5e-3455.48Show/hide
Query:  LKMAP---PLLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR-SPPPPPP-------YCNPALSPPPPPPRFIYTTGVPGHLSPPP
        +KMAP    LLS S L   ++L ++ TS  + V  +NPD EIKCGSCPCS PCIQ+ SPPPPPP        C P +S  PPPPRFIYTT  P   +PPP
Subjt:  LKMAP---PLLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR-SPPPPPP-------YCNPALSPPPPPPRFIYTTGVPGHLSPPP

Query:  PRFIYTTGVPDNVYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW
        PRF YTTGVP N+Y+ D N+ WYYFSG    +P + A  V  GCGAL LM F KW
Subjt:  PRFIYTTGVPDNVYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW

A0A5A7V4T2 Formin-like protein 32.4e-3558.04Show/hide
Query:  LLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR-SPPPPPP----YCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDN
        LLS S L L ++L  + TS  +S+  +NPD EIKCGSCPCS PCIQ+ SPPPPPP     C P +S  PPPPRFIYT   P   +PPPPRF YTTGVP N
Subjt:  LLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR-SPPPPPP----YCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDN

Query:  VYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW
        +Y+ D N+ WYYFSG T  +P + A +V  GCGAL LM F KW
Subjt:  VYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW

A0A5N5GE00 Phosphatidylinositol 4-kinase beta 1-like1.5e-1643.7Show/hide
Query:  TDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQRSPPPPPP--------YCNP----ALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDV
        T  D  PLVS   +  +  IKCG+CPC  PC Q+ PPPPPP         CNP     +  PPPPPRF+Y TG PG++ PPPPRF Y TG+P +VYQ   
Subjt:  TDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQRSPPPPPP--------YCNP----ALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDV

Query:  NSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFG
        ++  YY     +P+   +  L++    A  +MAFG
Subjt:  NSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFG

A0A6J1GAW3 leucine-rich repeat extensin-like protein 23.0e-2252.38Show/hide
Query:  MAPPLLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCP-CSKPCIQRSPPPPPPYCNPALSPPP-PPPRFIYTTGVPGHLSPPPP-RFIYTTGVP
        MAP    S+ +FL ++L+   TSP +S    +PD EI C S   CS P +Q+  P PP      L PPP PPPRF YTT      SPPPP RFIYTTGVP
Subjt:  MAPPLLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCP-CSKPCIQRSPPPPPPYCNPALSPPP-PPPRFIYTTGVPGHLSPPPP-RFIYTTGVP

Query:  DNVYQTDVNSQWYYFSGGTSPKPAVTAALVVAG--CGALDLMAFGKW
         ++YQ D  ++WYYFSG    KP   AALVV G  CGALDL+ FGKW
Subjt:  DNVYQTDVNSQWYYFSGGTSPKPAVTAALVVAG--CGALDLMAFGKW

A0A6J1J7W0 probable pathogenesis-related protein ARB_028612.2e-3659.59Show/hide
Query:  MAP-PLLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR---SPPPPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGV
        MAP   +  SL FLF+ L  A++ P+  V  ++P+ EIKCGSCPCS PC+++    PPPPPP C PAL PPPPPPRFIYT+  P    PPPPRFIYTTGV
Subjt:  MAP-PLLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQR---SPPPPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGV

Query:  PDNVYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW
        P N+YQ D N++WYYFSG T    A  A +V  GCGAL+LMAFGKW
Subjt:  PDNVYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G23040.1 hydroxyproline-rich glycoprotein family protein3.3e-0544.12Show/hide
Query:  CSKPCIQRSPP-------PPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTD
        CS  CIQ  PP       PPPP C P  + PPPPP+ + +   P    PPP  F+Y TG P N+Y  D
Subjt:  CSKPCIQRSPP-------PPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTD

AT3G03350.1 NAD(P)-binding Rossmann-fold superfamily protein5.7e-0547.83Show/hide
Query:  PPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFS
        PPPPR  Y +      SPPPP+++Y TGVP  +Y+T+ + QW Y S
Subjt:  PPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFS

AT3G03350.2 NAD(P)-binding Rossmann-fold superfamily protein1.2e-0536.76Show/hide
Query:  PPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALD
        PPPPR  Y +      SPPPP+++Y TGVP  +Y+T+ + QW Y S            +V+ G G ++
Subjt:  PPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFSGGTSPKPAVTAALVVAGCGALD

AT3G22800.1 Leucine-rich repeat (LRR) family protein2.8e-0437.08Show/hide
Query:  IKCGSCPCSKPC-----IQRSPPPPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFSGGTSPKP
        I C S  CS P          PPPPPP   P   PPPPPP ++Y +  P   SPPP  ++Y    P  VY    +  + Y     SP+P
Subjt:  IKCGSCPCSKPC-----IQRSPPPPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQWYYFSGGTSPKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCAAAATGGCGCCTCCTCTTCTCTCTTCTTCTCTTCTCTTCCTTTTCATTATCCTCACCGACGCCGATACCTCACCGTTGGTATCGGTCGGTTTGGAGAATCCCGATGT
CGAAATCAAATGTGGATCCTGCCCTTGTTCCAAGCCATGCATTCAGCGGTCGCCGCCGCCGCCACCGCCGTATTGCAACCCAGCGCTGTCACCCCCGCCACCGCCCCCGA
GGTTCATTTATACGACAGGTGTTCCCGGTCACTTGTCACCGCCGCCACCGAGGTTCATTTATACGACCGGCGTCCCCGATAACGTGTACCAAACCGATGTGAACAGCCAA
TGGTATTATTTCTCCGGTGGAACGTCGCCGAAGCCAGCGGTCACGGCGGCACTGGTGGTGGCGGGCTGTGGAGCTTTGGATCTCATGGCGTTTGGTAAGTGG
mRNA sequenceShow/hide mRNA sequence
CTCAAAATGGCGCCTCCTCTTCTCTCTTCTTCTCTTCTCTTCCTTTTCATTATCCTCACCGACGCCGATACCTCACCGTTGGTATCGGTCGGTTTGGAGAATCCCGATGT
CGAAATCAAATGTGGATCCTGCCCTTGTTCCAAGCCATGCATTCAGCGGTCGCCGCCGCCGCCACCGCCGTATTGCAACCCAGCGCTGTCACCCCCGCCACCGCCCCCGA
GGTTCATTTATACGACAGGTGTTCCCGGTCACTTGTCACCGCCGCCACCGAGGTTCATTTATACGACCGGCGTCCCCGATAACGTGTACCAAACCGATGTGAACAGCCAA
TGGTATTATTTCTCCGGTGGAACGTCGCCGAAGCCAGCGGTCACGGCGGCACTGGTGGTGGCGGGCTGTGGAGCTTTGGATCTCATGGCGTTTGGTAAGTGG
Protein sequenceShow/hide protein sequence
LKMAPPLLSSSLLFLFIILTDADTSPLVSVGLENPDVEIKCGSCPCSKPCIQRSPPPPPPYCNPALSPPPPPPRFIYTTGVPGHLSPPPPRFIYTTGVPDNVYQTDVNSQ
WYYFSGGTSPKPAVTAALVVAGCGALDLMAFGKW