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MS019138 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019138
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationscaffold20:1824641..1824823
RNA-Seq ExpressionMS019138
SyntenyMS019138
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2097180.1 hypothetical protein ES319_A01G154100v1 [Gossypium barbadense]7.0e-1577.42Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL
        L S FEITA IP I HN QEH VVLVREG VKDLPG RY IVRG LDAVG+KD QQGRSS L
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL

KAF5809815.1 putative ribosomal protein S12/S23 [Helianthus annuus]4.1e-1577.42Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL
        L S FEITA IP I HN QEHYVVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS L
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL

KAG2323189.1 hypothetical protein Bca52824_016402 [Brassica carinata]7.0e-1578.69Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSST
        L S FEITA IP I HNLQEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSST
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSST

KEH17698.1 S12-like, 30S ribosomal protein S12 subfamily protein [Medicago truncatula]3.2e-1577.42Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL
        L S FEITA IP I HNLQEH VVLVR G VKDLPG RYRI+RG LDAVG+KD QQGRSS L
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL

OMP12560.1 Ribosomal protein S12, bacteria [Corchorus olitorius]7.0e-1577.42Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL
        L S FEITA IP IDHN QEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS L
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL

TrEMBL top hitse value%identityAlignment
A0A072TLF8 S12-like, 30S ribosomal protein S12 subfamily protein1.5e-1577.42Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL
        L S FEITA IP I HNLQEH VVLVR G VKDLPG RYRI+RG LDAVG+KD QQGRSS L
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL

A0A1R3KZT2 Ribosomal protein S12, bacteria3.4e-1577.42Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL
        L S FEITA IP IDHN QEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS L
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL

A0A1W6F872 30S ribosomal protein S12, chloroplastic4.4e-1577.42Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL
        L S FEITA IP I HNLQEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS L
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL

A0A251VT10 Putative ribosomal protein S12/S232.0e-1577.42Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL
        L S FEITA IP I HN QEHYVVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS L
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL

A0A5J5WXQ2 Uncharacterized protein3.4e-1577.42Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL
        L S FEITA IP I HN QEH VVLVREG VKDLPG RY IVRG LDAVG+KD QQGRSS L
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL

SwissProt top hitse value%identityAlignment
A4QJV5 30S ribosomal protein S12-A, chloroplastic1.3e-1677.97Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRS
        L S FEITA IP I HNLQEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRS
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRS

Q0G9J5 30S ribosomal protein S12, chloroplastic6.0e-1775.81Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL
        L S FEITA IP I HN QEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS L
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL

Q1KXY0 30S ribosomal protein S12, chloroplastic6.0e-1775.81Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL
        L S FEITA IP I HN QEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS L
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL

Q332V3 30S ribosomal protein S12, chloroplastic6.0e-1775.81Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL
        L S FEITA IP I HN QEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS L
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL

Q85FG4 30S ribosomal protein S12, chloroplastic4.6e-1772.58Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL
        L S+FE+TA IP I HNLQEH VVLVR G VKDLPG RY IVRG LDAVG+KD ++GRSS L
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSSTL

Arabidopsis top hitse value%identityAlignment
ATCG00065.1 ribosomal protein S12A9.5e-1877.97Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRS
        L S FEITA IP I HNLQEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRS
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRS

ATCG00905.1 ribosomal protein S12C9.5e-1877.97Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRS
        L S FEITA IP I HNLQEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRS
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRS

ATCG01230.1 ribosomal protein S12B9.5e-1877.97Show/hide
Query:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRS
        L S FEITA IP I HNLQEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRS
Subjt:  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTAATCTCGAGATTTGAAATCACTGCTTGTATACCTAGTATTGACCATAATTTACAAGAACATTATGTAGTCTTAGTAAGAGAGGGAATGGTTAAGGATTTACCCGGGAG
ATATCGCATTGTTCGAGGAATCCTAGATGCTGTCGGAATAAAGGATGGTCAACAAGGGCGTTCTAGTACGTTG
mRNA sequenceShow/hide mRNA sequence
TTAATCTCGAGATTTGAAATCACTGCTTGTATACCTAGTATTGACCATAATTTACAAGAACATTATGTAGTCTTAGTAAGAGAGGGAATGGTTAAGGATTTACCCGGGAG
ATATCGCATTGTTCGAGGAATCCTAGATGCTGTCGGAATAAAGGATGGTCAACAAGGGCGTTCTAGTACGTTG
Protein sequenceShow/hide protein sequence
LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPGRYRIVRGILDAVGIKDGQQGRSSTL