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MS019140 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019140
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCalcium-binding EF-hand family protein
Genome locationscaffold20:1834469..1834762
RNA-Seq ExpressionMS019140
SyntenyMS019140
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149790.1 probable calcium-binding protein CML28 [Cucumis sativus]8.9e-2882.14Show/hide
Query:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        MAD SGV++ + ER+FKRFDANGDGKISATELGDAL  FGVS+EDAK MMDAIDKDGDG+IS  EF DFAKDNRALMKDFAKAF
Subjt:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF

XP_016902062.1 PREDICTED: polcalcin Bra n 2-like [Cucumis melo]1.5e-3085.71Show/hide
Query:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        MAD SGV++ +CER+FKRFDANGDGKISATELGDAL GFGVS+EDAK MMDAIDKDGDG+IS  EFSDFAKDNRALMKDFAKAF
Subjt:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF

XP_022143412.1 polcalcin Bra n 2-like [Momordica charantia]1.6e-37100Show/hide
Query:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
Subjt:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF

XP_022948513.1 probable calcium-binding protein CML28 [Cucurbita moschata]1.8e-2882.14Show/hide
Query:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        MAD +GV + ECER+FKRFDANGDG+ISATELGDAL G GVS+EDAK MMDAIDKDGDGFIS  EF +FAKDNRALMKDFAKAF
Subjt:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF

XP_038874793.1 probable calcium-binding protein CML28 [Benincasa hispida]1.2e-2986.25Show/hide
Query:  SGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        SGVSA +CER+FKRFDANGDGKISATELGDAL GFGVS EDAK MMDAIDKDGDG IS +EF++FAKDNRALMKDFAKAF
Subjt:  SGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF

TrEMBL top hitse value%identityAlignment
A0A0A0L775 Putative calcium-binding protein CML284.3e-2882.14Show/hide
Query:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        MAD SGV++ + ER+FKRFDANGDGKISATELGDAL  FGVS+EDAK MMDAIDKDGDG+IS  EF DFAKDNRALMKDFAKAF
Subjt:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF

A0A1S4E1G1 polcalcin Bra n 2-like7.1e-3185.71Show/hide
Query:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        MAD SGV++ +CER+FKRFDANGDGKISATELGDAL GFGVS+EDAK MMDAIDKDGDG+IS  EFSDFAKDNRALMKDFAKAF
Subjt:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF

A0A6J1CQR0 polcalcin Bra n 2-like7.8e-38100Show/hide
Query:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
Subjt:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF

A0A6J1G9I0 probable calcium-binding protein CML288.7e-2982.14Show/hide
Query:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        MAD +GV + ECER+FKRFDANGDG+ISATELGDAL G GVS+EDAK MMDAIDKDGDGFIS  EF +FAKDNRALMKDFAKAF
Subjt:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF

A0A6J1KB11 probable calcium-binding protein CML288.7e-2982.14Show/hide
Query:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        MAD +GV + ECER+FKRFDANGDG+ISATELGDAL G GVS+EDAK MMDAIDKDGDGFIS  EF +FAKDNRALMKDFAKAF
Subjt:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF

SwissProt top hitse value%identityAlignment
O81701 Polcalcin Aln g 44.6e-1961.18Show/hide
Query:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFG-VSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        MAD       E ER+FK FDANGDGKISA+ELGDALK  G V+ ++ K MM  ID DGDGFIS  EF++FA+ NR L+KD AK F
Subjt:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFG-VSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF

P69198 Polcalcin Bra n 27.1e-2063.53Show/hide
Query:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFG-VSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        MAD++     E +R+FK+FDANGDGKISA+ELGDALK  G V+ +D K MM  ID DGDG+IS  EFSDFA  NR LMKD AK F
Subjt:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFG-VSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF

P69199 Polcalcin Bra r 27.1e-2063.53Show/hide
Query:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFG-VSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        MAD++     E +R+FK+FDANGDGKISA+ELGDALK  G V+ +D K MM  ID DGDG+IS  EFSDFA  NR LMKD AK F
Subjt:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFG-VSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF

Q39419 Polcalcin Bet v 41.6e-1960Show/hide
Query:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFG-VSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        MAD       E ER+FKRFDANGDGKISA ELG+ALK  G ++ ++ K MM  ID DGDGFIS  EF+DF + NR L+KD AK F
Subjt:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFG-VSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF

Q9SRP7 Probable calcium-binding protein CML282.1e-1963.53Show/hide
Query:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFG-VSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        MAD++     E +R+FK+FDANGDGKISA ELGDALK  G V+ ED K MM  ID DGDG+IS  EF DFA  NR LMKD AK F
Subjt:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFG-VSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF

Arabidopsis top hitse value%identityAlignment
AT1G18210.1 Calcium-binding EF-hand family protein2.0e-0946.97Show/hide
Query:  EECERVFKRFDANGDGKISATELGDALKGFGVS-TE-DAKTMMDAIDKDGDGFISLDEFSDFAKDN
        EE ++VF +FD+NGDGKIS  ELG   K  G S TE +   +++ +D D DG+I+LDEFS   + +
Subjt:  EECERVFKRFDANGDGKISATELGDALKGFGVS-TE-DAKTMMDAIDKDGDGFISLDEFSDFAKDN

AT1G66400.1 calmodulin like 236.8e-1044.71Show/hide
Query:  SAEECERVFKRFDANGDGKISATELGDALKGF--GVSTEDAKTMMDAIDKDGDGFISLDEF------SDFAKDNRALMKDFAKAF
        S E+ ++VF+RFD N DGKIS  EL D +       S E+ K MM   D DG+GFI LDEF      SD + +N A+ +D  +AF
Subjt:  SAEECERVFKRFDANGDGKISATELGDALKGF--GVSTEDAKTMMDAIDKDGDGFISLDEF------SDFAKDNRALMKDFAKAF

AT1G73630.1 EF hand calcium-binding protein family8.9e-1042.86Show/hide
Query:  ECERVFKRFDANGDGKISATELGDALKGFGVS--TEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMK
        E ++VF +FDANGDGKIS +ELG+  K  G S   E+   ++D ID D DGFI+ +EF+   + + + ++
Subjt:  ECERVFKRFDANGDGKISATELGDALKGFGVS--TEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMK

AT3G03430.1 Calcium-binding EF-hand family protein1.5e-2063.53Show/hide
Query:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFG-VSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        MAD++     E +R+FK+FDANGDGKISA ELGDALK  G V+ ED K MM  ID DGDG+IS  EF DFA  NR LMKD AK F
Subjt:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFG-VSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF

AT5G17480.1 pollen calcium-binding protein 12.3e-1860Show/hide
Query:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFG-VSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF
        MAD++     E +R+FK+FDANGDGKISA EL +ALK  G V+ +D K MM  ID DGDG IS  EF+DFA  NR LMKD AK F
Subjt:  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFG-VSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTAATTAACTCGGAAGCCCTAATTAGTTGTTGGATCGCAGAAATGGCGGATAGTAGCGGCGTAAGCGCAGAGGAATGCGAGCGAGTGTTCAAGCGATTCGACGCGAACGG
CGACGGGAAGATATCGGCGACGGAGCTGGGAGACGCGTTGAAGGGGTTCGGAGTGAGCACTGAGGACGCGAAGACGATGATGGACGCCATTGATAAGGATGGCGATGGAT
TCATTTCGCTGGATGAGTTCTCGGATTTCGCCAAGGACAATCGCGCCTTGATGAAGGATTTCGCCAAGGCCTTT
mRNA sequenceShow/hide mRNA sequence
TTAATTAACTCGGAAGCCCTAATTAGTTGTTGGATCGCAGAAATGGCGGATAGTAGCGGCGTAAGCGCAGAGGAATGCGAGCGAGTGTTCAAGCGATTCGACGCGAACGG
CGACGGGAAGATATCGGCGACGGAGCTGGGAGACGCGTTGAAGGGGTTCGGAGTGAGCACTGAGGACGCGAAGACGATGATGGACGCCATTGATAAGGATGGCGATGGAT
TCATTTCGCTGGATGAGTTCTCGGATTTCGCCAAGGACAATCGCGCCTTGATGAAGGATTTCGCCAAGGCCTTT
Protein sequenceShow/hide protein sequence
LINSEALISCWIAEMADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGFISLDEFSDFAKDNRALMKDFAKAF