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MS019150 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019150
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold20:1955712..1955966
RNA-Seq ExpressionMS019150
SyntenyMS019150
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0016788 - hydrolase activity, acting on ester bonds (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY15545.1 Uncharacterized protein TCM_034564 [Theobroma cacao]5.2e-0835.8Show/hide
Query:  GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWVAETG--SWDLRLRRNQKEGEIEDWVAFSHHLSIIHLTID
        GNG N++FW+D W+ G +L   FP +F L++K+   +  F + E G  +W+++ RR   + E+E W  F   L   HL  D
Subjt:  GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWVAETG--SWDLRLRRNQKEGEIEDWVAFSHHLSIIHLTID

MCH87881.1 putative non-LTR retroelement reverse transcriptase [Trifolium medium]9.8e-0737.93Show/hide
Query:  GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWV--AETGSWDLRLRRNQKEGEIEDWVAFSHHLSIIHLTIDADTYHW
        GNG +  FW D W+   +L  KFP LF LSL+++A + +  V   E+ SW+L  RR   + E E  +    HL  + +TID D + W
Subjt:  GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWV--AETGSWDLRLRRNQKEGEIEDWVAFSHHLSIIHLTIDADTYHW

TYK21690.1 uncharacterized protein E5676_scaffold859G00550 [Cucumis melo var. makuwa]1.1e-0843.24Show/hide
Query:  GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWVAETGSWDLRLRRNQKEGEIEDWVAFSHHLSII
        GNG +ISFWK PWLN  +    FP LF L+      +   WV +  +WDL LRRN  + EI + +A S HL  +
Subjt:  GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWVAETGSWDLRLRRNQKEGEIEDWVAFSHHLSII

XP_026420434.1 uncharacterized protein LOC113316481 [Papaver somniferum]3.4e-0737.65Show/hide
Query:  NGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWV-AETGSWDLRLRRNQKEGEIEDWVAFSHHLSIIHLTIDADTYHW
        +GH   FWKD W+NG  L   FP L+ ++ K++A I++F V + + SW+L   RN KE E+ED     + L  I +    D   W
Subjt:  NGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWV-AETGSWDLRLRRNQKEGEIEDWVAFSHHLSIIHLTIDADTYHW

XP_026437824.1 uncharacterized protein LOC113336045 [Papaver somniferum]5.2e-0839.29Show/hide
Query:  NGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWVAETGSWDLRLRRNQKEGEIEDWVAFSHHLSIIHLTIDADTYHW
        NGHNI FWKDPW        +FP LF LS K +  +    + E G+WDL  RRN KE E+ +            L+ D D + W
Subjt:  NGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWVAETGSWDLRLRRNQKEGEIEDWVAFSHHLSIIHLTIDADTYHW

TrEMBL top hitse value%identityAlignment
A0A061FDY2 Uncharacterized protein2.5e-0835.8Show/hide
Query:  GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWVAETG--SWDLRLRRNQKEGEIEDWVAFSHHLSIIHLTID
        GNG N++FW+D W+ G +L   FP +F L++K+   +  F + E G  +W+++ RR   + E+E W  F   L   HL  D
Subjt:  GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWVAETG--SWDLRLRRNQKEGEIEDWVAFSHHLSIIHLTID

A0A392MKJ7 Putative non-LTR retroelement reverse transcriptase4.8e-0737.93Show/hide
Query:  GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWV--AETGSWDLRLRRNQKEGEIEDWVAFSHHLSIIHLTIDADTYHW
        GNG +  FW D W+   +L  KFP LF LSL+++A + +  V   E+ SW+L  RR   + E E  +    HL  + +TID D + W
Subjt:  GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWV--AETGSWDLRLRRNQKEGEIEDWVAFSHHLSIIHLTIDADTYHW

A0A5D3DE15 Uncharacterized protein5.1e-0943.24Show/hide
Query:  GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWVAETGSWDLRLRRNQKEGEIEDWVAFSHHLSII
        GNG +ISFWK PWLN  +    FP LF L+      +   WV +  +WDL LRRN  + EI + +A S HL  +
Subjt:  GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWVAETGSWDLRLRRNQKEGEIEDWVAFSHHLSII

A5B5D3 Reverse transcriptase domain-containing protein8.1e-0731.03Show/hide
Query:  GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWVA--ETGSWDLRLRRNQKEGEIEDWVAFSHHLSIIHLTIDADTYHW
        G G  +SFW D W   ++L + FP LF L+++  A I   W +  + G W++RL RN  + E++      H L  + ++++ D   W
Subjt:  GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWVA--ETGSWDLRLRRNQKEGEIEDWVAFSHHLSIIHLTIDADTYHW

M5WJY9 Uncharacterized protein (Fragment)1.6e-0742.05Show/hide
Query:  GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWV--AETGSWDLRLRRNQKEGEIEDWVAFSHHLSIIHLT-IDADTYHW
        GNG  + FW+D WL   LL   FP LF LS K+E  I +F +  A   +WD   RRN  E EI + V     L +IHL    AD   W
Subjt:  GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWV--AETGSWDLRLRRNQKEGEIEDWVAFSHHLSIIHLT-IDADTYHW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAAACGGACACAATATCTCATTTTGGAAAGACCCTTGGCTGAATGGTGATCTGCTTTACAGAAAATTCCCTCTCTTATTTGATTTGTCCCTAAAAGAAGAGGCAGATAT
AAAGAATTTCTGGGTTGCGGAAACAGGAAGTTGGGACTTGAGGCTTAGAAGAAATCAAAAGGAGGGTGAAATAGAGGATTGGGTTGCCTTTTCCCACCATCTCTCTATTA
TTCACTTAACAATTGATGCAGACACCTACCATTGG
mRNA sequenceShow/hide mRNA sequence
GGAAACGGACACAATATCTCATTTTGGAAAGACCCTTGGCTGAATGGTGATCTGCTTTACAGAAAATTCCCTCTCTTATTTGATTTGTCCCTAAAAGAAGAGGCAGATAT
AAAGAATTTCTGGGTTGCGGAAACAGGAAGTTGGGACTTGAGGCTTAGAAGAAATCAAAAGGAGGGTGAAATAGAGGATTGGGTTGCCTTTTCCCACCATCTCTCTATTA
TTCACTTAACAATTGATGCAGACACCTACCATTGG
Protein sequenceShow/hide protein sequence
GNGHNISFWKDPWLNGDLLYRKFPLLFDLSLKEEADIKNFWVAETGSWDLRLRRNQKEGEIEDWVAFSHHLSIIHLTIDADTYHW