; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS019167 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019167
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTHO complex subunit 4D-like
Genome locationscaffold20:2156196..2157567
RNA-Seq ExpressionMS019167
SyntenyMS019167
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143315.1 THO complex subunit 4D-like [Momordica charantia]2.3e-8795.51Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGSVRNLNINARPSACSISFKL--------MKNVQWQHDLLEDSLRASGISGIEIGT
        MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGSVRNLNINARPSACSISFKL        MKNVQWQHDLLEDSLRASGISGIEIGT
Subjt:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGSVRNLNINARPSACSISFKL--------MKNVQWQHDLLEDSLRASGISGIEIGT

Query:  KLYVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        KLYVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
Subjt:  KLYVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

XP_022143379.1 THO complex subunit 4D-like [Momordica charantia]2.8e-6981.61Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGSVRN--LNINARPSACSISF--KLMKNVQWQHDLLEDSLRASGISGIEIGTKLYV
        MATP+D+S E +IKKNNR+KLRAR RAR GRGAGGSFNGGRVVIGS+R   L+IN RPSA SIS   + MKNVQWQHDL EDSLRASGISGIEIGTKLYV
Subjt:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGSVRN--LNINARPSACSISF--KLMKNVQWQHDLLEDSLRASGISGIEIGTKLYV

Query:  SDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        S+L++GVTKEDI ELFS +GDLKRFAIHYDKNGRP G AEVVYTRRSDAFAA KRYNNVLLDGKP+KIEILG+N
Subjt:  SDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

XP_022935328.1 THO complex subunit 4D-like [Cucurbita moschata]5.3e-6881.71Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGR-VVIGSVRN--LNINARPSACSISF--KLMKNVQWQHDLLEDSLRASGISGIEIGTKLY
        MATP+D+S E VIKKNNR+KLRAR RAR GRGAGGS+NGGR VVIGSVR   L INARPSA SIS   + MKNVQWQHDL EDSLRASGISGIEIGTKLY
Subjt:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGR-VVIGSVRN--LNINARPSACSISF--KLMKNVQWQHDLLEDSLRASGISGIEIGTKLY

Query:  VSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        VS+L++GVTKEDI ELFS +GDLKRFAIHYDKNGRP G AEVVYTRRSDAFAA KRYNNVLLDGKP+KIE+LG+N
Subjt:  VSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

XP_022982649.1 THO complex subunit 4D-like [Cucurbita maxima]5.3e-6881.71Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGR-VVIGSVRN--LNINARPSACSISF--KLMKNVQWQHDLLEDSLRASGISGIEIGTKLY
        MATP+D+S E VIKKNNR+KLRAR RAR GRGAGGS+NGGR VVIGSVR   L INARPSA SIS   + MKNVQWQHDL EDSLRASGISGIEIGTKLY
Subjt:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGR-VVIGSVRN--LNINARPSACSISF--KLMKNVQWQHDLLEDSLRASGISGIEIGTKLY

Query:  VSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        VS+L++GVTKEDI ELFS +GDLKRFAIHYDKNGRP G AEVVYTRRSDAFAA KRYNNVLLDGKP+KIE+LG+N
Subjt:  VSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

XP_023527122.1 THO complex subunit 4D [Cucurbita pepo subsp. pepo]5.3e-6881.71Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGR-VVIGSVRN--LNINARPSACSISF--KLMKNVQWQHDLLEDSLRASGISGIEIGTKLY
        MATP+D+S E VIKKNNR+KLRAR RAR GRGAGGS+NGGR VVIGSVR   L INARPSA SIS   + MKNVQWQHDL EDSLRASGISGIEIGTKLY
Subjt:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGR-VVIGSVRN--LNINARPSACSISF--KLMKNVQWQHDLLEDSLRASGISGIEIGTKLY

Query:  VSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        VS+L++GVTKEDI ELFS +GDLKRFAIHYDKNGRP G AEVVYTRRSDAFAA KRYNNVLLDGKP+KIE+LG+N
Subjt:  VSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

TrEMBL top hitse value%identityAlignment
A0A1S3C452 THO complex subunit 4D5.3e-6680Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGR-VVIGSVRN--LNINARPSACSISF--KLMKNVQWQHDLLEDSLRASGISGIEIGTKLY
        M TP+D+S E VIKKNNR+KLRAR RAR GRGAGGSFNGGR VVIGSVR   L INAR SA SI      MKNVQWQHDL EDSLRASGISGI+IGTKLY
Subjt:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGR-VVIGSVRN--LNINARPSACSISF--KLMKNVQWQHDLLEDSLRASGISGIEIGTKLY

Query:  VSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        VS+L++GVTKEDI ELFS +GDLKRFAIHYDKNGRP G AEVVYTRRSDAFAA KRYNNVLLDGKP+KIE+LG+N
Subjt:  VSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

A0A6J1CNH0 THO complex subunit 4D-like1.1e-8795.51Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGSVRNLNINARPSACSISFKL--------MKNVQWQHDLLEDSLRASGISGIEIGT
        MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGSVRNLNINARPSACSISFKL        MKNVQWQHDLLEDSLRASGISGIEIGT
Subjt:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGSVRNLNINARPSACSISFKL--------MKNVQWQHDLLEDSLRASGISGIEIGT

Query:  KLYVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        KLYVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
Subjt:  KLYVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

A0A6J1CP51 THO complex subunit 4D-like1.3e-6981.61Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGSVRN--LNINARPSACSISF--KLMKNVQWQHDLLEDSLRASGISGIEIGTKLYV
        MATP+D+S E +IKKNNR+KLRAR RAR GRGAGGSFNGGRVVIGS+R   L+IN RPSA SIS   + MKNVQWQHDL EDSLRASGISGIEIGTKLYV
Subjt:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGSVRN--LNINARPSACSISF--KLMKNVQWQHDLLEDSLRASGISGIEIGTKLYV

Query:  SDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        S+L++GVTKEDI ELFS +GDLKRFAIHYDKNGRP G AEVVYTRRSDAFAA KRYNNVLLDGKP+KIEILG+N
Subjt:  SDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

A0A6J1FAB9 THO complex subunit 4D-like2.5e-6881.71Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGR-VVIGSVRN--LNINARPSACSISF--KLMKNVQWQHDLLEDSLRASGISGIEIGTKLY
        MATP+D+S E VIKKNNR+KLRAR RAR GRGAGGS+NGGR VVIGSVR   L INARPSA SIS   + MKNVQWQHDL EDSLRASGISGIEIGTKLY
Subjt:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGR-VVIGSVRN--LNINARPSACSISF--KLMKNVQWQHDLLEDSLRASGISGIEIGTKLY

Query:  VSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        VS+L++GVTKEDI ELFS +GDLKRFAIHYDKNGRP G AEVVYTRRSDAFAA KRYNNVLLDGKP+KIE+LG+N
Subjt:  VSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

A0A6J1J564 THO complex subunit 4D-like2.5e-6881.71Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGR-VVIGSVRN--LNINARPSACSISF--KLMKNVQWQHDLLEDSLRASGISGIEIGTKLY
        MATP+D+S E VIKKNNR+KLRAR RAR GRGAGGS+NGGR VVIGSVR   L INARPSA SIS   + MKNVQWQHDL EDSLRASGISGIEIGTKLY
Subjt:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGR-VVIGSVRN--LNINARPSACSISF--KLMKNVQWQHDLLEDSLRASGISGIEIGTKLY

Query:  VSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        VS+L++GVTKEDI ELFS +GDLKRFAIHYDKNGRP G AEVVYTRRSDAFAA KRYNNVLLDGKP+KIE+LG+N
Subjt:  VSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

SwissProt top hitse value%identityAlignment
B5FXN8 THO complex subunit 41.8e-2640.98Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGS----------FNGGRVVIGSVRNLNINA------RPSACSISFKLMKNVQWQHDLLEDSLRASG
        MA  +D+S + +IK  NR +  A R  R GRG GG+            GGR   G VRN  + A      RP+  S   +L +  +WQHDL +    A  
Subjt:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGS----------FNGGRVVIGSVRNLNINA------RPSACSISFKLMKNVQWQHDLLEDSLRASG

Query:  ISGIEIGTKLYVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEIL
         +G+E G KL VS+L+FGV+  DI ELF+  G LK+ A+HYD++GR  G A+V + R++DA  A K+YN V LDG+P+ I+++
Subjt:  ISGIEIGTKLYVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEIL

Q6NQ72 THO complex subunit 4D1.1e-3950Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRAR-CGRGAGGSFNGGRVVIGSVRN-LNINARPSACSIS--FKLMKNVQWQHDLLEDSLRASGISGIEIGTKLYV
        M+  ++++ + ++K+    +   R  +R  GRG GG   GGR    + R  L +NARPS+ +I+   + ++++ WQ  L ED LRA+G SG+E+GT+L+V
Subjt:  MATPVDISREAVIKKNNRKKLRARRRAR-CGRGAGGSFNGGRVVIGSVRN-LNINARPSACSIS--FKLMKNVQWQHDLLEDSLRASGISGIEIGTKLYV

Query:  SDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        ++L+ GVT EDI ELFS +G+++R+AIHYDKNGRP G AEVVY RRSDAF A K+YNNVLLDG+P+++EILG N
Subjt:  SDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

Q8L719 THO complex subunit 4B1.2e-3044.21Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGS--------VRNLNINARPSACSISFKLMKNVQWQHDLL--EDSLRAS-------
        M+  +D+S + +I K+NRK   +R R   G   GG+  GGR   GS           +     P +  I  +   +  WQ+D+   + S+ A+       
Subjt:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGS--------VRNLNINARPSACSISFKLMKNVQWQHDLL--EDSLRAS-------

Query:  ---GISGIEIGTKLYVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
           G S IE GTKLY+S+L++GV+ EDI ELFS VGDLKR+ IHYD++GR  G AEVV++RR DA AA KRYNNV LDGK +KIEI+G N
Subjt:  ---GISGIEIGTKLYVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

Q8L773 THO complex subunit 4A2.0e-3044.32Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGSVRNLNINARPSACSISFKLMKNVQ--WQHDLL----EDSLRASGISGIEIGTKL
        M+T +D+S + +I KN + +  A      G G+G          G  R  N N R S  S  ++  K  +  W HD+     ED       +GIE GTKL
Subjt:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGSVRNLNINARPSACSISFKLMKNVQ--WQHDLL----EDSLRASGISGIEIGTKL

Query:  YVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        Y+S+L++GV  EDI ELF+ VG+LKR+ +H+D++GR  G AEVVY+RR DA AA K+YN+V LDGKP+KIEI+G N
Subjt:  YVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

Q94EH8 THO complex subunit 4C7.7e-3847.03Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRA------RCGRGAGG--SFNGGRVVIGSVRN--LNINARPSACSISFKL---MKNVQW--QHDLLEDSLRASGI
        M+  ++++ + ++KK+  ++  A R        + GRG GG     GG    G VR   L +N RPS+     KL    +++ W  Q+DL E++LRA G+
Subjt:  MATPVDISREAVIKKNNRKKLRARRRA------RCGRGAGG--SFNGGRVVIGSVRN--LNINARPSACSISFKL---MKNVQW--QHDLLEDSLRASGI

Query:  SGIEIGTKLYVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        SG+E+GT +Y+++L+ GVT EDI EL++ +G+LKR+AIHYDKNGRP G AEVVY RRSDA  A ++YNNVLLDG+P+K+EILG N
Subjt:  SGIEIGTKLYVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

Arabidopsis top hitse value%identityAlignment
AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.5e-3947.03Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRA------RCGRGAGG--SFNGGRVVIGSVRN--LNINARPSACSISFKL---MKNVQW--QHDLLEDSLRASGI
        M+  ++++ + ++KK+  ++  A R        + GRG GG     GG    G VR   L +N RPS+     KL    +++ W  Q+DL E++LRA G+
Subjt:  MATPVDISREAVIKKNNRKKLRARRRA------RCGRGAGG--SFNGGRVVIGSVRN--LNINARPSACSISFKL---MKNVQW--QHDLLEDSLRASGI

Query:  SGIEIGTKLYVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        SG+E+GT +Y+++L+ GVT EDI EL++ +G+LKR+AIHYDKNGRP G AEVVY RRSDA  A ++YNNVLLDG+P+K+EILG N
Subjt:  SGIEIGTKLYVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

AT1G66260.2 RNA-binding (RRM/RBD/RNP motifs) family protein5.5e-3947.03Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRA------RCGRGAGG--SFNGGRVVIGSVRN--LNINARPSACSISFKL---MKNVQW--QHDLLEDSLRASGI
        M+  ++++ + ++KK+  ++  A R        + GRG GG     GG    G VR   L +N RPS+     KL    +++ W  Q+DL E++LRA G+
Subjt:  MATPVDISREAVIKKNNRKKLRARRRA------RCGRGAGG--SFNGGRVVIGSVRN--LNINARPSACSISFKL---MKNVQW--QHDLLEDSLRASGI

Query:  SGIEIGTKLYVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        SG+E+GT +Y+++L+ GVT EDI EL++ +G+LKR+AIHYDKNGRP G AEVVY RRSDA  A ++YNNVLLDG+P+K+EILG N
Subjt:  SGIEIGTKLYVSDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

AT5G37720.1 ALWAYS EARLY 47.6e-4150Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRAR-CGRGAGGSFNGGRVVIGSVRN-LNINARPSACSIS--FKLMKNVQWQHDLLEDSLRASGISGIEIGTKLYV
        M+  ++++ + ++K+    +   R  +R  GRG GG   GGR    + R  L +NARPS+ +I+   + ++++ WQ  L ED LRA+G SG+E+GT+L+V
Subjt:  MATPVDISREAVIKKNNRKKLRARRRAR-CGRGAGGSFNGGRVVIGSVRN-LNINARPSACSIS--FKLMKNVQWQHDLLEDSLRASGISGIEIGTKLYV

Query:  SDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        ++L+ GVT EDI ELFS +G+++R+AIHYDKNGRP G AEVVY RRSDAF A K+YNNVLLDG+P+++EILG N
Subjt:  SDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

AT5G37720.2 ALWAYS EARLY 47.6e-4150Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRAR-CGRGAGGSFNGGRVVIGSVRN-LNINARPSACSIS--FKLMKNVQWQHDLLEDSLRASGISGIEIGTKLYV
        M+  ++++ + ++K+    +   R  +R  GRG GG   GGR    + R  L +NARPS+ +I+   + ++++ WQ  L ED LRA+G SG+E+GT+L+V
Subjt:  MATPVDISREAVIKKNNRKKLRARRRAR-CGRGAGGSFNGGRVVIGSVRN-LNINARPSACSIS--FKLMKNVQWQHDLLEDSLRASGISGIEIGTKLYV

Query:  SDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        ++L+ GVT EDI ELFS +G+++R+AIHYDKNGRP G AEVVY RRSDAF A K+YNNVLLDG+P+++EILG N
Subjt:  SDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN

AT5G59950.3 RNA-binding (RRM/RBD/RNP motifs) family protein2.9e-3244.25Show/hide
Query:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGSVRNLNINARPSACSISFKLMKNVQWQHDLL----EDSLRASGISGIEIGTKLYV
        M+T +D+S + +I KN + +  A      G G+G          G  R  N N R S  S  ++      W HD+     ED       +GIE GTKLY+
Subjt:  MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGSVRNLNINARPSACSISFKLMKNVQWQHDLL----EDSLRASGISGIEIGTKLYV

Query:  SDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN
        S+L++GV  EDI ELF+ VG+LKR+ +H+D++GR  G AEVVY+RR DA AA K+YN+V LDGKP+KIEI+G N
Subjt:  SDLNFGVTKEDIMELFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACGCCTGTGGATATCTCACGAGAGGCTGTGATAAAGAAGAATAACCGTAAGAAGCTCAGAGCACGACGTAGGGCCCGTTGTGGGCGTGGAGCAGGTGGGTCTTT
TAATGGTGGAAGAGTAGTGATAGGGTCGGTTCGTAATCTCAACATAAATGCACGACCATCTGCTTGCTCAATTAGCTTTAAACTAATGAAGAATGTTCAATGGCAGCATG
ATTTACTTGAAGACAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCGACTTGAATTTTGGGGTGACCAAAGAAGATATAATGGAG
TTGTTCTCTGCTGTTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGCCGTCCATGTGGCTTGGCAGAGGTGGTATATACTCGTAGAAGTGATGCATTTGC
TGCTCAGAAGCGCTATAACAATGTGTTACTGGATGGGAAGCCATTGAAGATTGAAATTCTTGGTAACAAC
mRNA sequenceShow/hide mRNA sequence
ATGGCTACGCCTGTGGATATCTCACGAGAGGCTGTGATAAAGAAGAATAACCGTAAGAAGCTCAGAGCACGACGTAGGGCCCGTTGTGGGCGTGGAGCAGGTGGGTCTTT
TAATGGTGGAAGAGTAGTGATAGGGTCGGTTCGTAATCTCAACATAAATGCACGACCATCTGCTTGCTCAATTAGCTTTAAACTAATGAAGAATGTTCAATGGCAGCATG
ATTTACTTGAAGACAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCGACTTGAATTTTGGGGTGACCAAAGAAGATATAATGGAG
TTGTTCTCTGCTGTTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGCCGTCCATGTGGCTTGGCAGAGGTGGTATATACTCGTAGAAGTGATGCATTTGC
TGCTCAGAAGCGCTATAACAATGTGTTACTGGATGGGAAGCCATTGAAGATTGAAATTCTTGGTAACAAC
Protein sequenceShow/hide protein sequence
MATPVDISREAVIKKNNRKKLRARRRARCGRGAGGSFNGGRVVIGSVRNLNINARPSACSISFKLMKNVQWQHDLLEDSLRASGISGIEIGTKLYVSDLNFGVTKEDIME
LFSAVGDLKRFAIHYDKNGRPCGLAEVVYTRRSDAFAAQKRYNNVLLDGKPLKIEILGNN