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MS019179 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019179
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTranscription elongation factor SPT4 homolog
Genome locationscaffold20:2320273..2322064
RNA-Seq ExpressionMS019179
SyntenyMS019179
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006397 - mRNA processing (biological process)
GO:0006414 - translational elongation (biological process)
GO:0032786 - positive regulation of DNA-templated transcription, elongation (biological process)
GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter (biological process)
GO:0032044 - DSIF complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR009287 - Transcription initiation Spt4
IPR022800 - Spt4/RpoE2 zinc finger
IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR038510 - Spt4 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048459.1 transcription elongation factor SPT4-like protein 2 [Cucumis melo var. makuwa]4.8e-5399Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
XP_006448501.1 transcription elongation factor SPT4 homolog 2 [Citrus clementina]8.2e-5398Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
XP_008461561.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo]4.8e-5399Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
XP_022143259.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia]1.3e-53100Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
XP_031282363.1 transcription elongation factor SPT4 homolog 2 [Pistacia vera]8.2e-5398Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
TrEMBL top hitse value%identityAlignment
A0A0A0L9Q3 Transcription elongation factor SPT4 homolog2.3e-5399Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
A0A1S3CFH1 Transcription elongation factor SPT4 homolog2.3e-5399Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
A0A2H5P553 Transcription elongation factor SPT4 homolog4.0e-5398Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
A0A5A7U4T8 Transcription elongation factor SPT4-like protein 22.3e-5399Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
A0A6J1CNB4 Transcription elongation factor SPT4 homolog6.1e-54100Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
SwissProt top hitse value%identityAlignment
P63271 Transcription elongation factor SPT4-A4.7e-1944.09Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDL
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDL
Q3SYX6 Transcription elongation factor SPT44.7e-1944.09Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDL
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDL
Q6DGQ0 Transcription elongation factor SPT47.3e-2048.89Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALP
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M P  SW A+W RIG F PG Y + V+  LP
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALP
Q8LCQ3 Transcription elongation factor SPT4 homolog 18.8e-5085Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Q94C60 Transcription elongation factor SPT4 homolog 24.7e-5188Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Arabidopsis top hitse value%identityAlignment
AT5G08565.1 Transcription initiation Spt4-like protein6.2e-5185Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
AT5G08565.2 Transcription initiation Spt4-like protein1.9e-3971Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNG +S            L  G+F PGCYTLAVSEALPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
AT5G63670.1 SPT4 homolog 23.3e-5288Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
AT5G63670.2 SPT4 homolog 25.9e-4191.14Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRI
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRI
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCGCACCCGCTCAAATTCCCACCAGTTTTGGGCACGAGCTCAGAGCTTGTCTTCGTTGTCGTCTCGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGA
GAATTGTCCCTTCTTCAAGATGGACGAAGATCATGAGCGTGTTGTAGAGTGTACTACTCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTACCAGAAGTTGGGCTG
CTAGATGGCTGCGAATTGGAAGATTTGTCCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCAGAGGATTTGCAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCGCACCCGCTCAAATTCCCACCAGTTTTGGGCACGAGCTCAGAGCTTGTCTTCGTTGTCGTCTCGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGA
GAATTGTCCCTTCTTCAAGATGGACGAAGATCATGAGCGTGTTGTAGAGTGTACTACTCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTACCAGAAGTTGGGCTG
CTAGATGGCTGCGAATTGGAAGATTTGTCCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCAGAGGATTTGCAG
Protein sequenceShow/hide protein sequence
MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ