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MS019193 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019193
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpumilio homolog 5 isoform X2
Genome locationscaffold20:2448600..2448800
RNA-Seq ExpressionMS019193
SyntenyMS019193
Gene Ontology termsGO:0006417 - regulation of translation (biological process)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022148156.1 pumilio homolog 5 isoform X1 [Momordica charantia]5.2e-1670.15Show/hide
Query:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
        P+YFEYYCS VNL+  L PPLIS EN RLVRHIG   K +R++ S+DTANEFLL+SQG+LSTH+EET
Subjt:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
XP_022148158.1 pumilio homolog 5 isoform X2 [Momordica charantia]5.2e-1670.15Show/hide
Query:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
        P+YFEYYCS VNL+  L PPLIS EN RLVRHIG   K +R++ S+DTANEFLL+SQG+LSTH+EET
Subjt:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
XP_022980499.1 pumilio homolog 5 isoform X1 [Cucurbita maxima]2.8e-1470.15Show/hide
Query:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
        P+YFEYY S VNL+  L PPLIS EN RLVRHIG   K +RL+S++DTANEFL VSQG+LSTH EET
Subjt:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
XP_022980500.1 pumilio homolog 5 isoform X2 [Cucurbita maxima]2.8e-1470.15Show/hide
Query:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
        P+YFEYY S VNL+  L PPLIS EN RLVRHIG   K +RL+S++DTANEFL VSQG+LSTH EET
Subjt:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
XP_023526981.1 pumilio homolog 5 [Cucurbita pepo subsp. pepo]1.7e-1470.15Show/hide
Query:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
        P+YFEYY S VNL+  L PPLIS EN RLVRHIG   K +RL+S++DTANEFL VSQG+LSTH+EET
Subjt:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
TrEMBL top hitse value%identityAlignment
A0A6J1D3B4 pumilio homolog 5 isoform X22.5e-1670.15Show/hide
Query:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
        P+YFEYYCS VNL+  L PPLIS EN RLVRHIG   K +R++ S+DTANEFLL+SQG+LSTH+EET
Subjt:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
A0A6J1D4J0 pumilio homolog 5 isoform X12.5e-1670.15Show/hide
Query:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
        P+YFEYYCS VNL+  L PPLIS EN RLVRHIG   K +R++ S+DTANEFLL+SQG+LSTH+EET
Subjt:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
A0A6J1GTT3 pumilio homolog 52.4e-1468.66Show/hide
Query:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
        P+YFEYY S VNL+  L PPLIS EN RLVRHIG   K +RL+S++DT NEFL VSQG+LSTH+EET
Subjt:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
A0A6J1ITR8 pumilio homolog 5 isoform X21.4e-1470.15Show/hide
Query:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
        P+YFEYY S VNL+  L PPLIS EN RLVRHIG   K +RL+S++DTANEFL VSQG+LSTH EET
Subjt:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
A0A6J1IZG5 pumilio homolog 5 isoform X11.4e-1470.15Show/hide
Query:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
        P+YFEYY S VNL+  L PPLIS EN RLVRHIG   K +RL+S++DTANEFL VSQG+LSTH EET
Subjt:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIG--IKQKRLNSSNDTANEFLLVSQGALSTHKEET
SwissProt top hitse value%identityAlignment
Q9LJX4 Pumilio homolog 53.0e-0645.45Show/hide
Query:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIGIKQKRLNSSNDT--ANEFLLVSQGALSTHKEE
        P+Y  YY S +NL+  L PPLIS EN  L+RH G   +   +S D       L  S+ ALSTH+EE
Subjt:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIGIKQKRLNSSNDT--ANEFLLVSQGALSTHKEE
Arabidopsis top hitse value%identityAlignment
AT3G20250.1 pumilio 52.1e-0745.45Show/hide
Query:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIGIKQKRLNSSNDT--ANEFLLVSQGALSTHKEE
        P+Y  YY S +NL+  L PPLIS EN  L+RH G   +   +S D       L  S+ ALSTH+EE
Subjt:  PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIGIKQKRLNSSNDT--ANEFLLVSQGALSTHKEE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCCAGCTATTTTGAATATTATTGTTCTACTGTTAACTTGAGTCTAACGCTTTCTCCCCCTCTTATATCAAGCGAGAATCATAGATTAGTGCGACACATTGGTATTAAACA
AAAAAGATTGAACTCTTCAAATGACACTGCTAATGAATTTTTGTTAGTATCCCAAGGCGCCCTTTCGACTCATAAGGAGGAAACT
mRNA sequenceShow/hide mRNA sequence
CCCAGCTATTTTGAATATTATTGTTCTACTGTTAACTTGAGTCTAACGCTTTCTCCCCCTCTTATATCAAGCGAGAATCATAGATTAGTGCGACACATTGGTATTAAACA
AAAAAGATTGAACTCTTCAAATGACACTGCTAATGAATTTTTGTTAGTATCCCAAGGCGCCCTTTCGACTCATAAGGAGGAAACT
Protein sequenceShow/hide protein sequence
PSYFEYYCSTVNLSLTLSPPLISSENHRLVRHIGIKQKRLNSSNDTANEFLLVSQGALSTHKEET