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MS019203 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019203
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold20:2500631..2500870
RNA-Seq ExpressionMS019203
SyntenyMS019203
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4278922.1 unnamed protein product [Prunus armeniaca]7.1e-1555.13Show/hide
Query:  VLSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLI--YIVTFPKTSGGTGIGSIWLTNSALLSKWLWRF
        VLSSLPTY+LS+F+ P  V K LE++M+NFLWEG     + HL+   +V+ PK +GG GIG++   N ALL KWLWRF
Subjt:  VLSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLI--YIVTFPKTSGGTGIGSIWLTNSALLSKWLWRF

KAA0050814.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-1357.14Show/hide
Query:  LSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLI--YIVTFPKTSGGTGIGSIWLTNSALLSKWLWRF
        LSSLP Y LS+FQ P+   K +E+L +NFLW+GS G   SHLI   IVT PK  G  GI  + +TN ALLSKWLWR+
Subjt:  LSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLI--YIVTFPKTSGGTGIGSIWLTNSALLSKWLWRF

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.8e-1458.44Show/hide
Query:  LSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLI--YIVTFPKTSGGTGIGSIWLTNSALLSKWLWRF
        LSSLP Y LS+FQ P+   K +E+L +NFLW+GS G   SHLI   IVT PK  GG GI  + +TN ALLSKWLWR+
Subjt:  LSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLI--YIVTFPKTSGGTGIGSIWLTNSALLSKWLWRF

TYK05690.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.0e-1357.14Show/hide
Query:  LSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLI--YIVTFPKTSGGTGIGSIWLTNSALLSKWLWRF
        LSSLP Y LS+FQ  +   K +E+L +NFLW+GS G   SHLI   IVT PK  GG GI  + +TN ALLSKWLWR+
Subjt:  LSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLI--YIVTFPKTSGGTGIGSIWLTNSALLSKWLWRF

XP_030497604.1 uncharacterized protein LOC115713262 [Cannabis sativa]4.1e-1555.56Show/hide
Query:  VLSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLIY--IVTFPKTSGGTGIGSIWLTNSALLSKWLWRFLIQ
        VLSS P YFLS+F+ P  VTKALE+LM++FLWEG    G  HL+    V  P+  GG GIG++ LTN  LL KWLWRF ++
Subjt:  VLSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLIY--IVTFPKTSGGTGIGSIWLTNSALLSKWLWRFLIQ

TrEMBL top hitse value%identityAlignment
A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein3.8e-1458.44Show/hide
Query:  LSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLI--YIVTFPKTSGGTGIGSIWLTNSALLSKWLWRF
        LSSLP Y LS+FQ P+   K +E+L +NFLW+GS G   SHLI   IVT PK  GG GI  + +TN ALLSKWLWR+
Subjt:  LSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLI--YIVTFPKTSGGTGIGSIWLTNSALLSKWLWRF

A0A5D3C2W8 LINE-1 retrotransposable element ORF2 protein1.4e-1357.14Show/hide
Query:  LSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLI--YIVTFPKTSGGTGIGSIWLTNSALLSKWLWRF
        LSSLP Y LS+FQ  +   K +E+L +NFLW+GS G   SHLI   IVT PK  GG GI  + +TN ALLSKWLWR+
Subjt:  LSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLI--YIVTFPKTSGGTGIGSIWLTNSALLSKWLWRF

A0A5D3C9J6 LINE-1 retrotransposable element ORF2 protein1.1e-1357.14Show/hide
Query:  LSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLI--YIVTFPKTSGGTGIGSIWLTNSALLSKWLWRF
        LSSLP Y LS+FQ P+   K +E+L +NFLW+GS G   SHLI   IVT PK  G  GI  + +TN ALLSKWLWR+
Subjt:  LSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLI--YIVTFPKTSGGTGIGSIWLTNSALLSKWLWRF

A0A6J5XET8 Uncharacterized protein3.4e-1555.13Show/hide
Query:  VLSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLI--YIVTFPKTSGGTGIGSIWLTNSALLSKWLWRF
        VLSSLPTY+LS+F+ P  V K LE++M+NFLWEG     + HL+   +V+ PK +GG GIG++   N ALL KWLWRF
Subjt:  VLSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLI--YIVTFPKTSGGTGIGSIWLTNSALLSKWLWRF

A0A803P465 Uncharacterized protein1.5e-1554.88Show/hide
Query:  VLSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLIY--IVTFPKTSGGTGIGSIWLTNSALLSKWLWRFLIQR
        VLSSLP YFLS+F+ P  VTKALE++M++FLWEGS   G  HL+    V  P+  GG GIG + L N +LL KWLWRF +++
Subjt:  VLSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLIY--IVTFPKTSGGTGIGSIWLTNSALLSKWLWRFLIQR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCCTTAGTAGCTTGCCTACTTATTTTCTCTCGATCTTCCAAGATCCAACGAGAGTTACCAAGGCTCTTGAGCAGCTGATGCAGAATTTTTTATGGGAAGGTTCAAGAGG
AAAAGGTCAATCTCATTTGATTTACATAGTCACGTTCCCAAAAACCTCTGGTGGTACTGGTATTGGTAGCATCTGGCTCACAAATTCGGCTCTTCTATCCAAATGGTTGT
GGAGATTTCTTATCCAAAGG
mRNA sequenceShow/hide mRNA sequence
GTCCTTAGTAGCTTGCCTACTTATTTTCTCTCGATCTTCCAAGATCCAACGAGAGTTACCAAGGCTCTTGAGCAGCTGATGCAGAATTTTTTATGGGAAGGTTCAAGAGG
AAAAGGTCAATCTCATTTGATTTACATAGTCACGTTCCCAAAAACCTCTGGTGGTACTGGTATTGGTAGCATCTGGCTCACAAATTCGGCTCTTCTATCCAAATGGTTGT
GGAGATTTCTTATCCAAAGG
Protein sequenceShow/hide protein sequence
VLSSLPTYFLSIFQDPTRVTKALEQLMQNFLWEGSRGKGQSHLIYIVTFPKTSGGTGIGSIWLTNSALLSKWLWRFLIQR