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MS019205 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019205
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMaternal effect embryo arrest
Genome locationscaffold554:1294..1824
RNA-Seq ExpressionMS019205
SyntenyMS019205
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031767.1 uncharacterized protein E6C27_scaffold848G00060 [Cucumis melo var. makuwa]1.2e-6781.4Show/hide
Query:  RFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRG--GGEAVAH
        R TSTRIH++ALDG+VNVNSLFTFAVFLGVAWYPTA+PAANLL DDDDGPCAA  +VA++LIACHVYSFSCFLFSSL+ASALKQAIRI  G  GG+   H
Subjt:  RFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRG--GGEAVAH

Query:  ALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR
        A  LRVGM  SAVGS+LGCGFLV ALLNLVQIKLG FGC RWET AAAVPL++LVPSALFIYIALV+HAFTR
Subjt:  ALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR

XP_008457431.1 PREDICTED: uncharacterized protein LOC103497122 [Cucumis melo]2.7e-6780.81Show/hide
Query:  RFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRG--GGEAVAH
        R TSTRIH++ALDG+VNVNSLFTFAVFLGVAWYPTA+PAANLL DDDDGPCAA  +VA++LIACHVYSFSCFLFSSL+ASALKQAIRI  G  GG+   H
Subjt:  RFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRG--GGEAVAH

Query:  ALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR
        A  LRVGM  SAVGS+LGCGFLV ALLNLVQIKLG FGC RWET AAAVPL++LVP ALFIYIALV+HAFTR
Subjt:  ALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR

XP_011658339.1 uncharacterized protein LOC101206623 [Cucumis sativus]2.7e-6780.23Show/hide
Query:  RFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRG--GGEAVAH
        R TSTRIH++ALDG+VNVNSLFTFAVFLGVAWYPTA+PAANLL DDDDGPCAA  +VAE+LIACHVYSFSCFLFSSL+ASALKQAIR+  G  GG+   H
Subjt:  RFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRG--GGEAVAH

Query:  ALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR
        A  LRVGM  SAVGS+LGCGFLV ALLNL+QIKLG FGC RWET AAAVPL++LVP ALFIYIALV+HAFTR
Subjt:  ALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR

XP_022156092.1 uncharacterized protein LOC111023063 [Momordica charantia]5.4e-8497.13Show/hide
Query:  MSGGRFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRGGGEAV
        MSGGRFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAA AAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRGGGEAV
Subjt:  MSGGRFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRGGGEAV

Query:  AHALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR
        AHALGLRVG+ VSAVGSILGCGFLV ALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLH+FTR
Subjt:  AHALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR

XP_022970573.1 uncharacterized protein LOC111469508 [Cucurbita maxima]3.0e-6680.23Show/hide
Query:  RFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRI--SRGGGEAVAH
        R +STRIHVMALDG+VNVNSLFTFAVFLG+ WYPTADP  NLL DDDDGPCA  AA A+SLIACHVYSFSCFLFSSLVASALKQAIRI  S  GG    H
Subjt:  RFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRI--SRGGGEAVAH

Query:  ALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR
        A  LRVGM  SAVGS+LGCGFLV ALLNLVQIKLG FGC RWET AA VPL++LVP ALFIYI LVLHAFTR
Subjt:  ALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR

TrEMBL top hitse value%identityAlignment
A0A0A0LV03 Uncharacterized protein1.3e-6780.23Show/hide
Query:  RFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRG--GGEAVAH
        R TSTRIH++ALDG+VNVNSLFTFAVFLGVAWYPTA+PAANLL DDDDGPCAA  +VAE+LIACHVYSFSCFLFSSL+ASALKQAIR+  G  GG+   H
Subjt:  RFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRG--GGEAVAH

Query:  ALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR
        A  LRVGM  SAVGS+LGCGFLV ALLNL+QIKLG FGC RWET AAAVPL++LVP ALFIYIALV+HAFTR
Subjt:  ALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR

A0A1S3C532 uncharacterized protein LOC1034971221.3e-6780.81Show/hide
Query:  RFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRG--GGEAVAH
        R TSTRIH++ALDG+VNVNSLFTFAVFLGVAWYPTA+PAANLL DDDDGPCAA  +VA++LIACHVYSFSCFLFSSL+ASALKQAIRI  G  GG+   H
Subjt:  RFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRG--GGEAVAH

Query:  ALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR
        A  LRVGM  SAVGS+LGCGFLV ALLNLVQIKLG FGC RWET AAAVPL++LVP ALFIYIALV+HAFTR
Subjt:  ALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR

A0A5A7SQP6 Uncharacterized protein5.9e-6881.4Show/hide
Query:  RFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRG--GGEAVAH
        R TSTRIH++ALDG+VNVNSLFTFAVFLGVAWYPTA+PAANLL DDDDGPCAA  +VA++LIACHVYSFSCFLFSSL+ASALKQAIRI  G  GG+   H
Subjt:  RFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRG--GGEAVAH

Query:  ALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR
        A  LRVGM  SAVGS+LGCGFLV ALLNLVQIKLG FGC RWET AAAVPL++LVPSALFIYIALV+HAFTR
Subjt:  ALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR

A0A5D3BFZ3 Uncharacterized protein1.3e-6780.81Show/hide
Query:  RFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRG--GGEAVAH
        R TSTRIH++ALDG+VNVNSLFTFAVFLGVAWYPTA+PAANLL DDDDGPCAA  +VA++LIACHVYSFSCFLFSSL+ASALKQAIRI  G  GG+   H
Subjt:  RFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRG--GGEAVAH

Query:  ALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR
        A  LRVGM  SAVGS+LGCGFLV ALLNLVQIKLG FGC RWET AAAVPL++LVP ALFIYIALV+HAFTR
Subjt:  ALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR

A0A6J1DR42 uncharacterized protein LOC1110230632.6e-8497.13Show/hide
Query:  MSGGRFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRGGGEAV
        MSGGRFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAA AAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRGGGEAV
Subjt:  MSGGRFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRGGGEAV

Query:  AHALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR
        AHALGLRVG+ VSAVGSILGCGFLV ALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLH+FTR
Subjt:  AHALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01580.1 unknown protein6.3e-2239.31Show/hide
Query:  TSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRI--SRGGGEAVAHAL
        ++T +HV ALDG+V+ NSLFT AVF+G+++   +D     L   D   C+AG  V   L+   V SF+ FLFSSLVA  +K AI +  S+   E     +
Subjt:  TSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRI--SRGGGEAVAHAL

Query:  G---LRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR
            LR G+  +A GSILGC FL++++++++Q++LG   CG        + L+ LV SAL +YI  V ++F +
Subjt:  G---LRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR

AT3G07510.1 unknown protein2.2e-2744.89Show/hide
Query:  SGGRFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRI--SRGGGEA
        S     +T +HV ALDG+VNVNSLFT AVF+G++    A P  + L  +    C A A VA+ L+   V SFS FLFSSLVA  LK A+ +  S+   E 
Subjt:  SGGRFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRI--SRGGGEA

Query:  VAHALGLRV---GMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAF
            + ++V   GM  SAVGS++GC FL+++++N++QI+LG   CG    A A   L+TLV SAL IYI+  ++AF
Subjt:  VAHALGLRV---GMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAF

AT3G07510.2 unknown protein2.2e-2744.89Show/hide
Query:  SGGRFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRI--SRGGGEA
        S     +T +HV ALDG+VNVNSLFT AVF+G++    A P  + L  +    C A A VA+ L+   V SFS FLFSSLVA  LK A+ +  S+   E 
Subjt:  SGGRFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRI--SRGGGEA

Query:  VAHALGLRV---GMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAF
            + ++V   GM  SAVGS++GC FL+++++N++QI+LG   CG    A A   L+TLV SAL IYI+  ++AF
Subjt:  VAHALGLRV---GMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAF

AT3G46890.1 BEST Arabidopsis thaliana protein match is: maternal effect embryo arrest 60 (TAIR:AT5G05950.1)1.5e-3147.87Show/hide
Query:  STRIHVMALDGVVNVNSLFTFAVFLGVA-----WYPTADPAANLLADDDDGPC--AAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISR------
        +T IHV A+DG+VNVNSLF+ A+FLG+       +P +  A+    +     C  A G A+AE L++ HVYSFS FLFSSL+A +LKQAIR +       
Subjt:  STRIHVMALDGVVNVNSLFTFAVFLGVA-----WYPTADPAANLLADDDDGPC--AAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISR------

Query:  ---------GGGEAVAHALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGR-WETAAAAVPLITLVPSALFIYIALVLHAF
                   GE   +   LRVG+  S V S+LGCGFL +AL++LVQIKLG   C R +   AA VPL+ LVPSAL IY+ LVL+AF
Subjt:  ---------GGGEAVAHALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGR-WETAAAAVPLITLVPSALFIYIALVLHAF

AT5G05950.1 maternal effect embryo arrest 602.3e-4053.37Show/hide
Query:  STRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRGGGEAVA------
        +T IH+ ALDG+VNVNSLFT AVF+G+AW PT DP  +L+ D +   C   A +AE+L+A HVYSF+ FLFSSL+A  LKQA+R++      ++      
Subjt:  STRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRGGGEAVA------

Query:  ----HALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCG-RWETAAAAVPLITLVPSALFIYIALVLHAFTR
            +   LR GM  S +GS+ GCGFL++AL+N+VQIKLG  GCG    T AA VPL+ LVPSALFIY++L+L+AFTR
Subjt:  ----HALGLRVGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCG-RWETAAAAVPLITLVPSALFIYIALVLHAFTR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTATTTGACATGTCCGGCGGGCGATTCACATCCACCAGAATCCACGTCATGGCTCTCGACGGCGTCGTTAACGTCAACTCCCTCTTCACCTTCGCCGTTTTCCTCGGCGT
TGCCTGGTACCCCACCGCCGACCCCGCCGCCAACCTTCTCGCCGACGATGACGACGGGCCGTGCGCCGCCGGGGCCGCTGTGGCCGAGAGCCTCATCGCCTGCCACGTGT
ACTCGTTCAGCTGCTTCCTCTTCTCCAGCCTGGTGGCGTCGGCGCTGAAGCAGGCCATCCGAATAAGCAGAGGTGGCGGCGAGGCTGTGGCGCACGCGCTGGGGCTGCGC
GTGGGGATGGCGGTGTCGGCGGTGGGGTCGATTCTCGGGTGCGGGTTCTTGGTGGTGGCACTGCTGAATTTGGTTCAGATAAAGCTTGGGAAGTTCGGGTGCGGTCGGTG
GGAGACGGCGGCCGCCGCCGTCCCGTTGATCACTTTGGTTCCTTCCGCGCTGTTCATCTACATTGCCCTTGTCCTTCATGCCTTCACACGC
mRNA sequenceShow/hide mRNA sequence
GTATTTGACATGTCCGGCGGGCGATTCACATCCACCAGAATCCACGTCATGGCTCTCGACGGCGTCGTTAACGTCAACTCCCTCTTCACCTTCGCCGTTTTCCTCGGCGT
TGCCTGGTACCCCACCGCCGACCCCGCCGCCAACCTTCTCGCCGACGATGACGACGGGCCGTGCGCCGCCGGGGCCGCTGTGGCCGAGAGCCTCATCGCCTGCCACGTGT
ACTCGTTCAGCTGCTTCCTCTTCTCCAGCCTGGTGGCGTCGGCGCTGAAGCAGGCCATCCGAATAAGCAGAGGTGGCGGCGAGGCTGTGGCGCACGCGCTGGGGCTGCGC
GTGGGGATGGCGGTGTCGGCGGTGGGGTCGATTCTCGGGTGCGGGTTCTTGGTGGTGGCACTGCTGAATTTGGTTCAGATAAAGCTTGGGAAGTTCGGGTGCGGTCGGTG
GGAGACGGCGGCCGCCGCCGTCCCGTTGATCACTTTGGTTCCTTCCGCGCTGTTCATCTACATTGCCCTTGTCCTTCATGCCTTCACACGC
Protein sequenceShow/hide protein sequence
VFDMSGGRFTSTRIHVMALDGVVNVNSLFTFAVFLGVAWYPTADPAANLLADDDDGPCAAGAAVAESLIACHVYSFSCFLFSSLVASALKQAIRISRGGGEAVAHALGLR
VGMAVSAVGSILGCGFLVVALLNLVQIKLGKFGCGRWETAAAAVPLITLVPSALFIYIALVLHAFTR