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MS019213 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019213
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold554:218664..219062
RNA-Seq ExpressionMS019213
SyntenyMS019213
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022145148.1 uncharacterized protein LOC111014662 [Momordica charantia]4.0e-3959.4Show/hide
Query:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM
        QAI  ++MSCF+ P   C E++SL A+FWW  N +EKKIHW S+K++C+SKEQGG+GF D+ IFNQA+L KQSW I K   SLL R+L+ KY+K  GNFM
Subjt:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM

Query:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG
         AE+G N S+VW+SI+ GKE F KG  WRI NG
Subjt:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]8.7e-3450.38Show/hide
Query:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM
        QAI  +T+SCFKLP   CNE+  +  +FWW  + +++KIHW+S+K +CI K+ GGMGF DI+IFNQA+L KQSW I +  +SLLA+ L+ KY+K+ G+F+
Subjt:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM

Query:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG
        +A++G   SY W+SI+ G++ F KG  W++ NG
Subjt:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG

XP_023871998.1 uncharacterized protein LOC111984613 [Quercus suber]6.4e-2944.36Show/hide
Query:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM
        +A+ T+TMSCFK+P   C+E++S+ ++FWW    +E+K+ W S+ K+C+ K++GGMGF D+  FN+A+L KQ W +     SL  R+ K KY+    NF 
Subjt:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM

Query:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG
        +A +G+N SY W+SIM  +E   KG  WR+ NG
Subjt:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG

XP_030938668.1 uncharacterized protein LOC115963692 [Quercus lobata]4.9e-2943.61Show/hide
Query:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM
        QAI T+ MS FKLP   C+ ++SL AK+WW  N +E+KIHW ++KK+C SK++GGMGF D++ FN A+L KQ+W +++   SL  ++ K +Y+ +  +FM
Subjt:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM

Query:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG
         A++G N S+VW+S++  ++    G+ WR+ +G
Subjt:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG

XP_030939698.1 uncharacterized protein LOC115964550 [Quercus lobata]4.9e-2943.61Show/hide
Query:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM
        QAI T+ MS FKLP   C+ ++SL AK+WW  N +E+KIHW ++KK+C SK++GGMGF D++ FN A+L KQ+W +++   SL  ++ K +Y+ +  +FM
Subjt:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM

Query:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG
         A++G N S+VW+S++  ++    G+ WR+ +G
Subjt:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG

TrEMBL top hitse value%identityAlignment
A0A6J1CV63 uncharacterized protein LOC1110146621.9e-3959.4Show/hide
Query:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM
        QAI  ++MSCF+ P   C E++SL A+FWW  N +EKKIHW S+K++C+SKEQGG+GF D+ IFNQA+L KQSW I K   SLL R+L+ KY+K  GNFM
Subjt:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM

Query:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG
         AE+G N S+VW+SI+ GKE F KG  WRI NG
Subjt:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG

A0A6J1DRA0 uncharacterized protein LOC1110224234.2e-3450.38Show/hide
Query:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM
        QAI  +T+SCFKLP   CNE+  +  +FWW  + +++KIHW+S+K +CI K+ GGMGF DI+IFNQA+L KQSW I +  +SLLA+ L+ KY+K+ G+F+
Subjt:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM

Query:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG
        +A++G   SY W+SI+ G++ F KG  W++ NG
Subjt:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG

A0A803PM68 Uncharacterized protein1.8e-2945.11Show/hide
Query:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM
        QAI T+TMSCF+LP ++ N + S+ A+FWW  + K+ KIHW  +  +C  KEQGG+GF D+ +FNQA+L KQ W   +   SL +++LK  Y+ ++G  +
Subjt:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM

Query:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG
         A+ G ++S+VW+S++ GK+   KG  WRI NG
Subjt:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG

A0A803PV25 Uncharacterized protein3.1e-2945.11Show/hide
Query:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM
        QAI T+TMSCF+LP ++ N + S+ A+FWW  + K+ KIHW  +  +C  KEQGG+GF D+ +FNQA+L KQ W   +   SL +++LK  YY ++G  +
Subjt:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM

Query:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG
         A+ G ++S+VW+S++ GK+    G  WRI NG
Subjt:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG

A0A803PWX1 Uncharacterized protein1.8e-2946.62Show/hide
Query:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM
        QAI T+TMSCF+LP ++ N + S+ A+FWW  + K+ KIHW  +  +C  KEQGG+GF D+ +FNQA+L KQ W   +   SL +R+LK  YY + G  +
Subjt:  QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM

Query:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG
         A+ G ++S+VW+S++ GK+   KG  WRI NG
Subjt:  RAEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657502.0e-0929.46Show/hide
Query:  AISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFMR
        ++  H+MS   LP    N +  L+  F W    ++KK H   + K+C  K++GG+G       N+A++ K  W + ++  SL   +L++KY+       R
Subjt:  AISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFMR

Query:  AEIGKNS-SYVWKSIMCG-KEFFDKGNSW
          I K S S  W+SI  G ++    G  W
Subjt:  AEIGKNS-SYVWKSIMCG-KEFFDKGNSW

P93295 Uncharacterized mitochondrial protein AtMg003104.6e-2240Show/hide
Query:  AISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKE-QGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM
        A+  + MSCF+L    C +++S   +FWWS    ++KI W +++K+C SKE  GG+GF D+  FNQA+L KQS+ I  Q  +LL+R+L+ +Y+    + M
Subjt:  AISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKE-QGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM

Query:  RAEIGKNSSYVWKSIMCGKEFFDKG
           +G   SY W+SI+ G+E   +G
Subjt:  RAEIGKNSSYVWKSIMCGKEFFDKG

Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein9.9e-0427.35Show/hide
Query:  AISTHTMSCFKLPTRSCNEVSSLNAKFWWS---FNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQL---ESLLARILKEKYYKS
        +++   MS F+LP+    E+ S+ + F WS    N K+ K+ W     +C  K++GG+G   +   N+       W IS        +  +ILK +   S
Subjt:  AISTHTMSCFKLPTRSCNEVSSLNAKFWWS---FNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQL---ESLLARILKEKYYKS

Query:  IGNFMRAEI--GKNSSY
           F++ +I  G N+S+
Subjt:  IGNFMRAEI--GKNSSY

AT4G29090.1 Ribonuclease H-like superfamily protein8.7e-2437.88Show/hide
Query:  AISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFMR
        A+ T+TM+CF LP   C ++ S+ A FWW    + K +HW+++  +   K +GG+GF DI  FN A+LGKQ W +  + ESL+A++ K +Y+    + + 
Subjt:  AISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFMR

Query:  AEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG
        A +G   S+VWKSI   +E   +G    + NG
Subjt:  AEIGKNSSYVWKSIMCGKEFFDKGNSWRIRNG

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.3e-2340Show/hide
Query:  AISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKE-QGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM
        A+  + MSCF+L    C +++S   +FWWS    ++KI W +++K+C SKE  GG+GF D+  FNQA+L KQS+ I  Q  +LL+R+L+ +Y+    + M
Subjt:  AISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKE-QGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFM

Query:  RAEIGKNSSYVWKSIMCGKEFFDKG
           +G   SY W+SI+ G+E   +G
Subjt:  RAEIGKNSSYVWKSIMCGKEFFDKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAAGCGATCTCAACACATACTATGAGTTGCTTTAAACTCCCCACAAGATCATGCAATGAAGTTAGCTCTCTAAATGCGAAGTTCTGGTGGAGCTTCAATCACAAAGAAAA
GAAAATTCACTGGAGAAGCTATAAGAAAATGTGCATAAGCAAAGAGCAAGGGGGCATGGGTTTCATAGATATAAATATATTCAACCAGGCCATATTGGGTAAACAGAGTT
GGGGAATCTCAAAACAACTCGAGAGTCTTTTGGCCAGAATTCTAAAAGAAAAATATTACAAAAGTATTGGTAATTTTATGAGAGCAGAGATAGGTAAAAATTCATCCTAT
GTGTGGAAAAGCATCATGTGTGGCAAGGAATTTTTTGATAAAGGTAACAGTTGGAGAATTAGAAATGGC
mRNA sequenceShow/hide mRNA sequence
CAAGCGATCTCAACACATACTATGAGTTGCTTTAAACTCCCCACAAGATCATGCAATGAAGTTAGCTCTCTAAATGCGAAGTTCTGGTGGAGCTTCAATCACAAAGAAAA
GAAAATTCACTGGAGAAGCTATAAGAAAATGTGCATAAGCAAAGAGCAAGGGGGCATGGGTTTCATAGATATAAATATATTCAACCAGGCCATATTGGGTAAACAGAGTT
GGGGAATCTCAAAACAACTCGAGAGTCTTTTGGCCAGAATTCTAAAAGAAAAATATTACAAAAGTATTGGTAATTTTATGAGAGCAGAGATAGGTAAAAATTCATCCTAT
GTGTGGAAAAGCATCATGTGTGGCAAGGAATTTTTTGATAAAGGTAACAGTTGGAGAATTAGAAATGGC
Protein sequenceShow/hide protein sequence
QAISTHTMSCFKLPTRSCNEVSSLNAKFWWSFNHKEKKIHWRSYKKMCISKEQGGMGFIDINIFNQAILGKQSWGISKQLESLLARILKEKYYKSIGNFMRAEIGKNSSY
VWKSIMCGKEFFDKGNSWRIRNG