; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS019221 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019221
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold554:354302..354484
RNA-Seq ExpressionMS019221
SyntenyMS019221
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_018848492.1 uncharacterized protein LOC109011659 [Juglans regia]8.3e-0851.85Show/hide
Query:  FVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSL
        FV +V++CVT+VS++ +IN + KG +  +R +R+GDPI PY+FLLC EGL++ L
Subjt:  FVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSL

XP_019168373.1 PREDICTED: uncharacterized protein LOC109164072 [Ipomoea nil]6.4e-0852.94Show/hide
Query:  FVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLS
        +++L++ CVT+VSY FMIN  R   +   R +R+GDP+FPY+F++CAEGLS
Subjt:  FVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLS

XP_023888394.1 uncharacterized protein LOC112000487 [Quercus suber]1.1e-0750Show/hide
Query:  FVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSS
        +V L++ C+T+V+Y  M+N + KG++ L+R +R+GDPI PY+FL CAEGL++
Subjt:  FVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSS

XP_030486801.1 uncharacterized protein LOC115703706 [Cannabis sativa]8.3e-0850.82Show/hide
Query:  PYHFVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSLYDLK
        P HFV LV RC+T+ S  F IN Q  G L   R +R+ DPI PY+F+LC+EGLS+ L + +
Subjt:  PYHFVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSLYDLK

XP_030509188.1 uncharacterized protein LOC115723863 [Cannabis sativa]6.4e-0852.83Show/hide
Query:  VQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSL
        V L++RC+T+V+Y F++N   KG++  +R IR+GDP+ PY+FL+CAEGLS  L
Subjt:  VQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSL

TrEMBL top hitse value%identityAlignment
A0A2N9GC56 Reverse transcriptase domain-containing protein8.1e-0950.91Show/hide
Query:  FVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSLY
        ++QLV+ C+ SVSY  ++N +  GM+Y +R +R+GDP+ PY+FLLC EGLS+ L+
Subjt:  FVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSLY

A0A2N9GHD2 CCHC-type domain-containing protein1.4e-0853.7Show/hide
Query:  FVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSL
        +V+LV+ CVTSV+Y  M+N ++KG +   R +R+GDP+ PY+FL+CAEGLS+ L
Subjt:  FVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSL

A0A2N9HME5 Reverse transcriptase domain-containing protein2.4e-0847.27Show/hide
Query:  FVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSLY
        ++++V+ C+TSVSY  ++N +  G++Y  R +R+GDP+ PY+FLLC EGLS+ L+
Subjt:  FVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSLY

A0A803Q1A0 Uncharacterized protein1.1e-0850.88Show/hide
Query:  PYHFVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSL
        P  F++LV+ C+T+ ++ F IN Q +G++  +R IR+GDP+ PY+FL+CAEGLSS L
Subjt:  PYHFVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSL

A0A803Q2K8 Uncharacterized protein3.1e-0852.83Show/hide
Query:  VQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSL
        V L++RC+T+V+Y F++N   KG++  +R IR+GDP+ PY+FL+CAEGLS  L
Subjt:  VQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)1.2e-0447.22Show/hide
Query:  FMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLS
        F+IN   +G++  +R +R+GDP+ PY+F+LC E LS
Subjt:  FMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCCTATCATTTTGTGCAGCTGGTAATCAGATGTGTAACTTCTGTTTCCTATTATTTTATGATTAATAGCCAGAGAAAAGGGATGTTGTATCTAAATAGGGAAATCCGTCG
AGGAGACCCTATTTTCCCTTACGTGTTTTTGCTATGTGCAGAAGGCCTATCCTCTTCGCTTTACGATTTGAAG
mRNA sequenceShow/hide mRNA sequence
CCCTATCATTTTGTGCAGCTGGTAATCAGATGTGTAACTTCTGTTTCCTATTATTTTATGATTAATAGCCAGAGAAAAGGGATGTTGTATCTAAATAGGGAAATCCGTCG
AGGAGACCCTATTTTCCCTTACGTGTTTTTGCTATGTGCAGAAGGCCTATCCTCTTCGCTTTACGATTTGAAG
Protein sequenceShow/hide protein sequence
PYHFVQLVIRCVTSVSYYFMINSQRKGMLYLNREIRRGDPIFPYVFLLCAEGLSSSLYDLK