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MS019227 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019227
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReplication protein A subunit
Genome locationscaffold554:437940..438176
RNA-Seq ExpressionMS019227
SyntenyMS019227
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0006974 - cellular response to DNA damage stimulus (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5512925.1 hypothetical protein RHGRI_038656 [Rhododendron griersonianum]2.6e-0945.57Show/hide
Query:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI
        GT+IQAV+FNDVI    ++  K  SYFI NG VKPVN +YANV++E+E+ L+ ++ VE+ +  I L+  ++ F  F  +
Subjt:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI

KAG5520322.1 hypothetical protein RHGRI_033033 [Rhododendron griersonianum]9.8e-0944.3Show/hide
Query:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI
        GT IQA+MFN+ I+ + +   + ++YFI NG VKPVN KYA+ ++EIE+ LS  ++VEE +  I L   K++FI    +
Subjt:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI

KAG5563556.1 hypothetical protein RHGRI_006105 [Rhododendron griersonianum]9.8e-0944.3Show/hide
Query:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI
        GT IQA+MFN+ I+ + +   + ++YFI NG VKPVN KYA+ ++EIE+ LS  ++VEE +  I L   K++FI    +
Subjt:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI

XP_042508246.1 replication protein A 70 kDa DNA-binding subunit D-like [Macadamia integrifolia]7.5e-0939.24Show/hide
Query:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI
        GTKIQA+ FNDV++ +  ++   K+YFI +  VK VN  + N+N+E EL+L+ +S++EE+E+ + +   K+NF + + +
Subjt:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI

XP_042511724.1 replication protein A 70 kDa DNA-binding subunit D-like [Macadamia integrifolia]5.7e-0940.51Show/hide
Query:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI
        GTKIQA+ FNDV++ +  ++   K+YFI +  VK VN  + NVN+E EL+L+ +S++EE+E+ + +   K+NF + + +
Subjt:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI

TrEMBL top hitse value%identityAlignment
A0A5J4ZGE1 DUF223 domain-containing protein2.0e-0739.24Show/hide
Query:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI
        GTKIQAVMFN+ + K     + +K+Y I NG VK  N K+ NV+  +EL L P ++V E       H+    F++F  +
Subjt:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI

A0A5J4ZI14 REPA_OB_2 domain-containing protein5.8e-0741.77Show/hide
Query:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI
        GTKIQAVMFN+ I K     + +K+Y I NG VK  N K+ANV+  +EL L   + V+E       H+    F++F  I
Subjt:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI

A0A5J4ZXX7 Protein kinase domain-containing protein2.0e-0739.24Show/hide
Query:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI
        GTKIQAVMFN+ + K     + +K+Y I NG VK  N K+ NV+  +EL L P ++V E       H+    F++F  +
Subjt:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI

A0A5J5C6R4 Protein kinase domain-containing protein3.4e-0743.04Show/hide
Query:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI
        GTKIQAVMFN+ I K     + +K+Y I NG VK  N K+ANV+  IEL L   + V+E       H+    F++F  I
Subjt:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI

A0A6J1DNS8 replication protein A 70 kDa DNA-binding subunit E-like2.3e-0852.46Show/hide
Query:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIE
        G  IQ  +FND+IEK G  +EK K+Y I +GN+KP++ +Y NV+ +IE+SLS +S+V+EIE
Subjt:  GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAACAAAGATACAGGCGGTCATGTTTAATGATGTCATCGAAAAAATAGGAAAGAGTATGGAAAAAAATAAATCATACTTCATTCAAAATGGAAATGTAAAACCAGTGAA
TAACAAATACGCGAATGTTAATCGTGAGATAGAACTAAGTCTATCTCCATCATCAGAGGTCGAAGAAATTGAAGAGTTTATTGGTTTACATATGTTGAAATTCAATTTTA
TTGAATTTTCAACTATT
mRNA sequenceShow/hide mRNA sequence
GGAACAAAGATACAGGCGGTCATGTTTAATGATGTCATCGAAAAAATAGGAAAGAGTATGGAAAAAAATAAATCATACTTCATTCAAAATGGAAATGTAAAACCAGTGAA
TAACAAATACGCGAATGTTAATCGTGAGATAGAACTAAGTCTATCTCCATCATCAGAGGTCGAAGAAATTGAAGAGTTTATTGGTTTACATATGTTGAAATTCAATTTTA
TTGAATTTTCAACTATT
Protein sequenceShow/hide protein sequence
GTKIQAVMFNDVIEKIGKSMEKNKSYFIQNGNVKPVNNKYANVNREIELSLSPSSEVEEIEEFIGLHMLKFNFIEFSTI