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MS019235 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019235
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem II CP47 reaction center protein
Genome locationscaffold156:160401..160505
RNA-Seq ExpressionMS019235
SyntenyMS019235
Gene Ontology termsGO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domainsIPR000932 - Photosystem antenna protein-like
IPR036001 - Photosystem antenna protein-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAF72606.1 photosystem II apoprotein, partial [Ginkgo biloba]6.9e-0785.71Show/hide
Query:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
        DRATLKSD VFRSSPRGWFTF HA FAL FFS HI
Subjt:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
AET46393.1 photosystem II CP47 protein [Pseudotsuga menziesii var. menziesii]6.9e-0785.71Show/hide
Query:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
        DRATLKSD VFRSSPRGWFTF HA FAL FFS HI
Subjt:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
QXO02643.1 photosystem II p680 chlorophyll A apoprotein [Anoectochilus hainanensis]6.9e-0785.71Show/hide
Query:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
        DRATLKSD VFRSSPRGWFTF HA FALFFF  HI
Subjt:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
YP_004891202.1 photosystem II 47 kDa protein [Larix decidua]6.9e-0785.71Show/hide
Query:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
        DRATLKSD VFRSSPRGWFTF HA FAL FFS HI
Subjt:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
YP_005352733.1 psbB gene product [Ginkgo biloba]6.9e-0785.71Show/hide
Query:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
        DRATLKSD VFRSSPRGWFTF HA FAL FFS HI
Subjt:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
TrEMBL top hitse value%identityAlignment
A0A3B6GPT0 Photosystem II CP47 reaction center protein2.6e-0785.71Show/hide
Query:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
        DRATLKSD VFRSSPRGWFTF HA FAL FF RHI
Subjt:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
A0A453DVL2 Uncharacterized protein2.6e-0785.71Show/hide
Query:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
        DRATLKSD VFRSSPRGWFTF HA FAL FF RHI
Subjt:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
A0A453DVL7 Uncharacterized protein2.6e-0785.71Show/hide
Query:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
        DRATLKSD VFRSSPRGWFTF HA FAL FF RHI
Subjt:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
A0A453DVL8 Uncharacterized protein2.6e-0785.71Show/hide
Query:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
        DRATLKSD VFRSSPRGWFTF HA FAL FF RHI
Subjt:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
G8ITL6 Photosystem II CP47 reaction center protein3.3e-0785.71Show/hide
Query:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
        DRATLKSD VFRSSPRGWFTF HA FAL FFS HI
Subjt:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
SwissProt top hitse value%identityAlignment
A1EA34 Photosystem II CP47 reaction center protein4.5e-0982.86Show/hide
Query:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
        DRATLKSD VFRSSPRGWFTF HA FAL FF  HI
Subjt:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
A2T359 Photosystem II CP47 reaction center protein4.5e-0982.86Show/hide
Query:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
        DRATLKSD VFRSSPRGWFTF HA FAL FF  HI
Subjt:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
P41624 Photosystem II CP47 reaction center protein9.1e-1085.71Show/hide
Query:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
        DRATLKSD VFRSSPRGWFTF HA FAL FFS HI
Subjt:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
Q85AI7 Photosystem II CP47 reaction center protein4.5e-0982.86Show/hide
Query:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
        DRATLKSD VFRSSPRGWFTF HA FAL FF  HI
Subjt:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
Q85X12 Photosystem II CP47 reaction center protein9.1e-1085.71Show/hide
Query:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
        DRATLKSD VFRSSPRGWFTF HA FAL FFS HI
Subjt:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
Arabidopsis top hitse value%identityAlignment
ATCG00680.1 photosystem II reaction center protein B4.2e-1082.86Show/hide
Query:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI
        DRATLKSD VFRSSPRGWFTF HA FAL FF  HI
Subjt:  DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATCGTGCTACTTTAAAATCTGACAAAGTTTTTCGTAGTAGTCCAAGGGGTTGGTTTACTTTTAGGCATGCTTTGTTTGCTTTGTTCTTTTTCTCTAGACACATT
mRNA sequenceShow/hide mRNA sequence
GATCGTGCTACTTTAAAATCTGACAAAGTTTTTCGTAGTAGTCCAAGGGGTTGGTTTACTTTTAGGCATGCTTTGTTTGCTTTGTTCTTTTTCTCTAGACACATT
Protein sequenceShow/hide protein sequence
DRATLKSDKVFRSSPRGWFTFRHALFALFFFSRHI