; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS019236 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019236
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionBED-type domain-containing protein
Genome locationscaffold156:179406..179636
RNA-Seq ExpressionMS019236
SyntenyMS019236
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAD6454786.1 hypothetical protein E3N88_09492 [Mikania micrantha]1.0e-1864.1Show/hide
Query:  TNKGARKDPAWKYGIKVQEGAIG--KCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK
        + K AR+DPAWKYG++ Q  A G  K Y Y+KCNFC+KVI GGVKRMK+ LG THK+VAPC+KV  EVK+EI  YLK+
Subjt:  TNKGARKDPAWKYGIKVQEGAIG--KCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK

PKU85311.1 hypothetical protein MA16_Dca010470 [Dendrobium catenatum]1.6e-1961.04Show/hide
Query:  KTNKGARKDPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK
        KTN   R+DP+WKY ++V  G   K Y+YLKCN CNKV+KGGV RMK+ L  +HKNVAPC KV D VK+EI  Y+KK
Subjt:  KTNKGARKDPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK

TDF68898.1 hypothetical protein EYS13_18315, partial [Zhaonella formicivorans]4.6e-1959.74Show/hide
Query:  KTNKGARKDPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK
        K   G RKDPAWKY  +V  G   K YVYLKCN+C+KV+KGGV RM + L G+HKNVAPC+KV D V+ EI+ Y+ K
Subjt:  KTNKGARKDPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK

XP_028550851.1 uncharacterized protein LOC110112362 [Dendrobium catenatum]4.1e-2061.04Show/hide
Query:  KTNKGARKDPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK
        K   G RKDPAWKY  +V  G   K YVYLKCN+C+KV+KGGV RMK+ L G+HKNVAPC+KV D V++EI+ Y+ K
Subjt:  KTNKGARKDPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK

XP_039117838.1 uncharacterized protein LOC120253587 [Dioscorea cayenensis subsp. rotundata]3.0e-2373.24Show/hide
Query:  RKDPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK
        RKDPAWKYG++V+    GK YVY++C FCNKVIKGGVKRMKD LGGTHKNV PC+KV  +VKQEI DY+KK
Subjt:  RKDPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK

TrEMBL top hitse value%identityAlignment
A0A2I0XBN0 BED-type domain-containing protein7.6e-2061.04Show/hide
Query:  KTNKGARKDPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK
        KTN   R+DP+WKY ++V  G   K Y+YLKCN CNKV+KGGV RMK+ L  +HKNVAPC KV D VK+EI  Y+KK
Subjt:  KTNKGARKDPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK

A0A4R5JD50 BED-type domain-containing protein (Fragment)2.2e-1959.74Show/hide
Query:  KTNKGARKDPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK
        K   G RKDPAWKY  +V  G   K YVYLKCN+C+KV+KGGV RM + L G+HKNVAPC+KV D V+ EI+ Y+ K
Subjt:  KTNKGARKDPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK

A0A5N6LFN6 BED-type domain-containing protein6.4e-1964.1Show/hide
Query:  TNKGARKDPAWKYGIKVQEGAIG--KCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK
        + K AR+DPAWKYG++ Q  A G  K Y Y+KCNFC KVI GGVKRMK+ LG THK+VAPC+KV  EVK+EI  YLK+
Subjt:  TNKGARKDPAWKYGIKVQEGAIG--KCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK

A0A5N6P6Q8 BED-type domain-containing protein6.4e-1962.82Show/hide
Query:  TNKGARKDPAWKYGIKVQEGAIG--KCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK
        + K AR+DPAWKYG++ Q  A G  K Y Y+KCNFC+K+I GGVKRMK+ LG THK+VAPC+KV  EVK+EI  YLK+
Subjt:  TNKGARKDPAWKYGIKVQEGAIG--KCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK

A0A5N6PLE9 BED-type domain-containing protein4.9e-1964.1Show/hide
Query:  TNKGARKDPAWKYGIKVQEGAIG--KCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK
        + K AR+DPAWKYG++ Q  A G  K Y Y+KCNFC+KVI GGVKRMK+ LG THK+VAPC+KV  EVK+EI  YLK+
Subjt:  TNKGARKDPAWKYGIKVQEGAIG--KCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G36095.1 DNA binding6.8e-0540.43Show/hide
Query:  KCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK
        +CN+C+KV  GGVK  K  + G  +NV  C+ V   +++EI+D + K
Subjt:  KCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK

AT1G79740.1 hAT transposon superfamily4.7e-0634.78Show/hide
Query:  KDPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGG-THKNVAPCNKVLDEVKQEIQDYL
        KD  W+Y  K+    +       KC FC++V+ GG+ R+K  L     K V PC KV D+V   ++  L
Subjt:  KDPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGG-THKNVAPCNKVLDEVKQEIQDYL

AT3G17450.1 hAT dimerisation domain-containing protein3.9e-0836.76Show/hide
Query:  DPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLK
        DP W++GI   E         +KCN+CNK++ GG+ R K  L      VAPC    +EV  +I++ +K
Subjt:  DPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAACAAATAAAGGGGCTAGAAAAGATCCAGCATGGAAGTATGGTATCAAGGTGCAAGAAGGTGCAATAGGAAAATGTTATGTTTATCTGAAATGCAATTTTTGT
AACAAAGTTATTAAAGGAGGTGTTAAAAGAATGAAAGATCAACTTGGAGGAACACATAAAAATGTTGCACCATGTAATAAAGTTCTTGACGAGGTTAAACAAGAG
ATTCAAGATTATCTCAAAAAA
mRNA sequenceShow/hide mRNA sequence
AAAACAAATAAAGGGGCTAGAAAAGATCCAGCATGGAAGTATGGTATCAAGGTGCAAGAAGGTGCAATAGGAAAATGTTATGTTTATCTGAAATGCAATTTTTGT
AACAAAGTTATTAAAGGAGGTGTTAAAAGAATGAAAGATCAACTTGGAGGAACACATAAAAATGTTGCACCATGTAATAAAGTTCTTGACGAGGTTAAACAAGAG
ATTCAAGATTATCTCAAAAAA
Protein sequenceShow/hide protein sequence
KTNKGARKDPAWKYGIKVQEGAIGKCYVYLKCNFCNKVIKGGVKRMKDQLGGTHKNVAPCNKVLDEVKQEIQDYLKK