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MS019240 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019240
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold156:230731..231111
RNA-Seq ExpressionMS019240
SyntenyMS019240
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKI31543.1 hypothetical protein CRG98_048066, partial [Punica granatum]1.9e-2242.06Show/hide
Query:  FATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKA
        FAT CWLLWSWRN  +F+  F     +   I +T  SF + W LV  +    ++ W +ISW     + +KLN DGS+ GN G     GL+R++DG WI  
Subjt:  FATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKA

Query:  FKQNLGYTTSIVAELWVILPGLKLAW
        F QN+G     +AELW +L G ++AW
Subjt:  FKQNLGYTTSIVAELWVILPGLKLAW

PKI38929.1 hypothetical protein CRG98_040701 [Punica granatum]1.8e-2040.31Show/hide
Query:  LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLS--SKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNW
        +F   CWL W WRNKA+FDP F R  +   II +T   F  +      LS  + A + W ++ W+      +KLN+D ++ GN G   V GL ++  G W
Subjt:  LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLS--SKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNW

Query:  IKAFKQNLGYTTSIVAELWVILPGLKLAW
        +  F +N+G TTSI  ELWV+ P L+LAW
Subjt:  IKAFKQNLGYTTSIVAELWVILPGLKLAW

PKI64943.1 hypothetical protein CRG98_014657 [Punica granatum]4.3e-2241.73Show/hide
Query:  LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIK
        +FA  CWL+WSWRNK +FDP           I RT   F +SW     +   +N+ W DI W     +  KLN  GS  GN G  G   LIRN  G W+ 
Subjt:  LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIK

Query:  AFKQNLGYTTSIVAELWVILPGLKLAW
         F QN+  T+  + ELW +L GL+LAW
Subjt:  AFKQNLGYTTSIVAELWVILPGLKLAW

XP_031376896.1 uncharacterized protein LOC116192475 [Punica granatum]1.9e-2244.88Show/hide
Query:  LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIK
        LF   CWLLW WRNK +F+  F R  D V  IR T  +F  +  L +  +S+  R W  I W+       K+N DG++ GN G  G  GL+RN DG+WI 
Subjt:  LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIK

Query:  AFKQNLGYTTSIVAELWVILPGLKLAW
         F  N+G+ TS +AELW  L GL+LAW
Subjt:  AFKQNLGYTTSIVAELWVILPGLKLAW

XP_031402735.1 uncharacterized protein LOC116212324 [Punica granatum]1.7e-2343.31Show/hide
Query:  LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIK
        +F  GCWL+WSWRNK+IFD TF R  D+ + I R  +SF   W+    +  +  R W  + W        KLN DG++ GN G  G  G++R  DG W  
Subjt:  LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIK

Query:  AFKQNLGYTTSIVAELWVILPGLKLAW
        +F +N+G  T++VAELW +L GL+LAW
Subjt:  AFKQNLGYTTSIVAELWVILPGLKLAW

TrEMBL top hitse value%identityAlignment
A0A2I0HIV6 Uncharacterized protein (Fragment)9.2e-2342.06Show/hide
Query:  FATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKA
        FAT CWLLWSWRN  +F+  F     +   I +T  SF + W LV  +    ++ W +ISW     + +KLN DGS+ GN G     GL+R++DG WI  
Subjt:  FATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKA

Query:  FKQNLGYTTSIVAELWVILPGLKLAW
        F QN+G     +AELW +L G ++AW
Subjt:  FKQNLGYTTSIVAELWVILPGLKLAW

A0A2I0I4J3 RNase H domain-containing protein8.7e-2140.31Show/hide
Query:  LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLS--SKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNW
        +F   CWL W WRNKA+FDP F R  +   II +T   F  +      LS  + A + W ++ W+      +KLN+D ++ GN G   V GL ++  G W
Subjt:  LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLS--SKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNW

Query:  IKAFKQNLGYTTSIVAELWVILPGLKLAW
        +  F +N+G TTSI  ELWV+ P L+LAW
Subjt:  IKAFKQNLGYTTSIVAELWVILPGLKLAW

A0A2I0KA00 RNase H domain-containing protein2.1e-2241.73Show/hide
Query:  LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIK
        +FA  CWL+WSWRNK +FDP           I RT   F +SW     +   +N+ W DI W     +  KLN  GS  GN G  G   LIRN  G W+ 
Subjt:  LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIK

Query:  AFKQNLGYTTSIVAELWVILPGLKLAW
         F QN+  T+  + ELW +L GL+LAW
Subjt:  AFKQNLGYTTSIVAELWVILPGLKLAW

A0A6P8C599 uncharacterized protein LOC1161924759.2e-2344.88Show/hide
Query:  LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIK
        LF   CWLLW WRNK +F+  F R  D V  IR T  +F  +  L +  +S+  R W  I W+       K+N DG++ GN G  G  GL+RN DG+WI 
Subjt:  LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIK

Query:  AFKQNLGYTTSIVAELWVILPGLKLAW
         F  N+G+ TS +AELW  L GL+LAW
Subjt:  AFKQNLGYTTSIVAELWVILPGLKLAW

A0A6P8E5K3 uncharacterized protein LOC1162123248.4e-2443.31Show/hide
Query:  LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIK
        +F  GCWL+WSWRNK+IFD TF R  D+ + I R  +SF   W+    +  +  R W  + W        KLN DG++ GN G  G  G++R  DG W  
Subjt:  LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIK

Query:  AFKQNLGYTTSIVAELWVILPGLKLAW
        +F +N+G  T++VAELW +L GL+LAW
Subjt:  AFKQNLGYTTSIVAELWVILPGLKLAW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTTTTGCGACTGGTTGTTGGCTCTTGTGGTCCTGGAGAAACAAAGCTATTTTCGACCCAACTTTCTGTAGGGCAGTGGACTCAGTCATAATAATTCGAAGAACT
GTGGATAGCTTTATCAAGTCTTGGAAGTTGGTAGCACCTCTCTCAAGCAAAGCAAATCGATGCTGGGCCGATATTAGTTGGAAGCCACTACAAATTAATTTATGG
AAGCTTAACATAGATGGGTCAGCGCATGGCAACCTTGGAAGGGTAGGAGTTAGAGGCTTAATTAGGAATTCTGATGGAAATTGGATAAAGGCCTTTAAGCAAAAC
CTGGGCTACACGACGTCAATTGTTGCAGAATTATGGGTTATCCTACCTGGTCTAAAATTGGCTTGG
mRNA sequenceShow/hide mRNA sequence
CTTTTTGCGACTGGTTGTTGGCTCTTGTGGTCCTGGAGAAACAAAGCTATTTTCGACCCAACTTTCTGTAGGGCAGTGGACTCAGTCATAATAATTCGAAGAACT
GTGGATAGCTTTATCAAGTCTTGGAAGTTGGTAGCACCTCTCTCAAGCAAAGCAAATCGATGCTGGGCCGATATTAGTTGGAAGCCACTACAAATTAATTTATGG
AAGCTTAACATAGATGGGTCAGCGCATGGCAACCTTGGAAGGGTAGGAGTTAGAGGCTTAATTAGGAATTCTGATGGAAATTGGATAAAGGCCTTTAAGCAAAAC
CTGGGCTACACGACGTCAATTGTTGCAGAATTATGGGTTATCCTACCTGGTCTAAAATTGGCTTGG
Protein sequenceShow/hide protein sequence
LFATGCWLLWSWRNKAIFDPTFCRAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFKQN
LGYTTSIVAELWVILPGLKLAW